ConstructVarAnnotate: ConstructVarAnnotate

In zunderlab/FLOWMAP: Graph-based visualizations of high-dimensional single-cell data across time

ConstructVarAnnotate

Description

ConstructVarAnnotate returns a list that can be used during FLOWMAPR analysis to change channel names from the default "name" field used in a flowFrame to the names provided in the "desc" fields. Generally in CyTOF/mass cytometry or flow cytometry data, the original "name" field corresponds to the measurement channel (e.g. FITC or Sm154Di) while the "desc" field will correspond to the name of the marker entered by the user at the machine (e.g. cCaspase3 or CyclinB1).

Usage

ConstructVarAnnotate(FCS.file.name)

Arguments

FCS.file.name

The full file path to one FCS file intended for analysis

Value

List mapping channel names (taken from the "name" field of a flowFrame) to alternative names from the flowFrame "desc" fields

Examples

## Not run: ConstructVarAnnotate(FCS.file.name = system.file("extdata/SingleFLOWMAP/d1.fcs",package = "FLOWMAPR"))

zunderlab/FLOWMAP documentation built on Sept. 7, 2024, 6:31 p.m.