SuggestVarRemove: SuggestVarRemove

In zunderlab/FLOWMAP: Graph-based visualizations of high-dimensional single-cell data across time

SuggestVarRemove

Description

SuggestVarRemove returns a vector of channel names that suggest markers to remove during FLOWMAPR analysis based on the annotated channel list var.annotate and var.to.remove a user-supplied list of substrings that designate the names of blank channels.

Usage

SuggestVarRemove(var.annotate, var.to.remove = NULL)

Arguments

var.annotate	List mapping channel names to user-specified names to properly annotate all FCS file data
var.to.remove	Vector of substrings to, default is set to NULL

Value

Vector naming channels suggested to be removed from downstream FLOWMAPR analysis

Examples

var.annotate <- ConstructVarAnnotate("Desktop/A.fcs")
SuggestVarRemove(var.annotate, var.to.remove = "Blank_Channel")

zunderlab/FLOWMAP documentation built on Sept. 7, 2024, 6:31 p.m.