htx_load: load a SummarizedExperiment shell for the Human Transcriptome...

Description Usage Arguments Value Examples

Description

load a SummarizedExperiment shell for the Human Transcriptome Compendium

Usage

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  htx_load(remotePath = "https://s3.amazonaws.com/bcfound-bigrna/htxcompSE.rds",
  cache = BiocFileCache::BiocFileCache(), genesOnly = TRUE)

Arguments

remotePath

path to an RDS representation of the DelayedArray-based SummarizedExperiment

cache

a BiocFileCache instance, defaulting to value of BiocFileCache()

genesOnly

logical(1) if TRUE return reference to SummarizedExperiment with gene-level quantifications; in this case the remotePath value is set to 'https://s3.amazonaws.com/bcfound-bigrna/rangedHtxGeneSE.rds'.

Value

a RangedSummarizedExperiment instance

Examples

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HumanTranscriptomeCompendium documentation built on Nov. 8, 2020, 8:15 p.m.