makegeno: Create a group of locus objects from some SNPs, assign to...
In SNPassoc: SNPs-Based Whole Genome Association Studies

make.geno

R Documentation

Create a group of locus objects from some SNPs, assign to 'model.matrix' class.

Description

This function prepares the CRITICAL element corresponding to matrix of genotypes necessary to be included in 'haplo.glm' function.

Usage

make.geno(data, SNPs.sel)

Arguments

`data`	an object of class 'setupSNP' containing the the SNPs that will be used to estimate the haplotypes.
`SNPs.sel`	a vector indicating the names of SNPs that are used to estimate the haplotypes

Value

the same as 'setupGeno' function, from 'haplo.stats' library, returns

Examples

## Not run:
data(SNPs)
# first, we create an object of class 'setupSNP'
datSNP<-setupSNP(SNPs,6:40,sep="")
geno<-make.geno(datSNP,c("snp10001","snp10002","snp10003"))
## End(Not run)

SNPassoc documentation built on Oct. 30, 2024, 9:26 a.m.