QMP: Quantitative Microbiome Project data

In GraceYoon/SPRING: Semi-Parametric Rank-based approach for INference in Graphical model (SPRING)

Quantitative Microbiome Project data

Description

The data containing quantitative microbiome count data of dimenstion 106 samples/subjects (in rows) and 91 OTUs (in columns). The raw dataset is pruned the taxa present less than 30% of samples and final dataset contains only healthy subjects from two cohorts: Study cohort and Disease cohort.

Usage

QMP

Format

An object of class matrix (inherits from array) with 106 rows and 91 columns.

Source

Yoon, Gaynanova and Müller (2019) Microbial Networks in SPRING - Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data. Frontiers in Genetics. 10:516. doi:10.3389/fgene.2019.00516

Vanderputte et al. (2017) Quantitative microbiome profiling links gut community variation to microbial load. Nature. 551: 507-511. doi:10.1038/nature24460

GraceYoon/SPRING documentation built on June 29, 2022, 4:14 p.m.