generate_offspring: Generate a synthetic offspring

In stephenbates19/digitaltwins: Causal inference for SNPs

Description

Takes two haplotypes of equal length and create an offspring haplotype via recombination.

Usage

generate_offspring(x1, x2, z = NULL, d = NULL, lambda = 0.012,
  epsilon = 1e-08)

Arguments

x1	One parental haplotype, a vector of length p with each entry 0 or 1.
x2	A second parental haplotype, a vector of length p with each entry 0 or 1.
d	vector of genetic distances between sites. Should be the same length as x1.
lambda	recombination rate per unit of genetic distance
epsilon	de novo mutation rate

Value

Offspring haplotype. A vector of length equal to x1 with each entry 0 or 1.

stephenbates19/digitaltwins documentation built on Feb. 25, 2020, 12:41 a.m.