asDGEList: Convert a SummarizedExperiment object to a DGEList object
In DavisLaboratory/emtdata: An ExperimentHub Package for data sets with an Epithelial to Mesenchymal Transition (EMT)
Description
Usage
Arguments
Value
Examples
View source: R/se_conversion.R
Description
This function converts a SummarizedExperiment object to a DGEList object to
enhance differential expression analysis using the edgeR package.
Usage
1
asDGEList(se, assay_name = "counts")
Arguments
se
a SummarizedExperiment object.
assay_name
a character, specifying the assay to retrieve.
Value
a DGEList object
Examples
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library(ExperimentHub)
eh = ExperimentHub()
query(eh, 'emtdata')
cursons2018_se = eh[['EH5440']]
cursons2018_dge = asDGEList(cursons2018_se)
DavisLaboratory/emtdata documentation built on Dec. 17, 2021, 4:09 p.m.
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Description Usage Arguments Value Examples
View source: R/se_conversion.R
Description
This function converts a SummarizedExperiment object to a DGEList object to enhance differential expression analysis using the edgeR package.
Usage
1 | asDGEList(se, assay_name = "counts")
|
Arguments
se |
a SummarizedExperiment object. |
assay_name |
a character, specifying the assay to retrieve. |
Value
a DGEList object
Examples
1 2 3 4 5 6 7 | library(ExperimentHub)
eh = ExperimentHub()
query(eh, 'emtdata')
cursons2018_se = eh[['EH5440']]
cursons2018_dge = asDGEList(cursons2018_se)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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