getGeneSets: Get a collection of gene sets to perform enrichment on

In escape: Easy single cell analysis platform for enrichment

Description

This function allows users to select libraries and specific gene.sets to form a GeneSetCollection that is a list of gene sets.

Usage

getGeneSets(species = "Homo sapiens", library = NULL, gene.sets = NULL)

Arguments

species	The scientific name of the species of interest in order to get correcent gene nomenclature
library	Individual libraries or multiple libraries to select, example: library = c("H", "C5").
gene.sets	Select gene sets or pathways, using specific names, example: pathways = c("HALLMARK_TNFA_SIGNALING_VIA_NFKB").

Value

List of GeneSets in collection format

Author(s)

Nick Borcherding, Jared Andrews

Examples

GS <- getGeneSets(library = "H")

escape documentation built on Nov. 8, 2020, 8:21 p.m.