simGO: Simplify GO enrichment result
In genekitr: Gene Analysis Toolkit
simGO R Documentation
Simplify GO enrichment result
Description
The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product
attributes across all species.
Usage
simGO(
enrich_df,
sim_method = c("Resnik", "Lin", "Rel", "Jiang", "Wang"),
org = NULL,
ont = NULL
)
Arguments
enrich_df
GO enrichment analysis of 'genORA()' result.
sim_method
Method of calculating the similarity between nodes, one of one of "Resnik",
"Lin", "Rel", "Jiang" , "Wang" methods.
org
Organism name from 'biocOrg_name'.
ont
One of "bp", "mf", and "cc".
Value
A 'data.frame' contains simplified GO terms.
genekitr documentation built on Sept. 11, 2024, 9:10 p.m.
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| simGO | R Documentation |
Simplify GO enrichment result
Description
The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.
Usage
simGO(
enrich_df,
sim_method = c("Resnik", "Lin", "Rel", "Jiang", "Wang"),
org = NULL,
ont = NULL
)
Arguments
enrich_df |
GO enrichment analysis of 'genORA()' result. |
sim_method |
Method of calculating the similarity between nodes, one of one of "Resnik", "Lin", "Rel", "Jiang" , "Wang" methods. |
org |
Organism name from 'biocOrg_name'. |
ont |
One of "bp", "mf", and "cc". |
Value
A 'data.frame' contains simplified GO terms.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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