simGO: Simplify GO enrichment result

In genekitr: Gene Analysis Toolkit

Simplify GO enrichment result

Description

The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.

Usage

simGO(
  enrich_df,
  sim_method = c("Resnik", "Lin", "Rel", "Jiang", "Wang"),
  org = NULL,
  ont = NULL
)

Arguments

enrich_df	GO enrichment analysis of 'genORA()' result.
sim_method	Method of calculating the similarity between nodes, one of one of "Resnik", "Lin", "Rel", "Jiang" , "Wang" methods.
org	Organism name from 'biocOrg_name'.
ont	One of "bp", "mf", and "cc".

Value

A 'data.frame' contains simplified GO terms.

genekitr documentation built on Sept. 8, 2023, 6:06 p.m.