getEnrichrdb: Get EnrichrDB geneset and geneset_name Geneset is a...

In geneset: Get Gene Sets for Gene Enrichment Analysis

Get EnrichrDB geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id

Description

Get EnrichrDB geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id

Usage

getEnrichrdb(
  org = c("human", "fly", "yeast", "worm", "zebrafish"),
  library = NULL,
  download.method = NULL,
  data_dir = NULL
)

Arguments

org	Organism from 'human','fly','yeast','worm','zebrafish'.
library	Choose one library name from 'enrichr_metadata'.
download.method	"auto" (as default if NULL), "wininet" (for windows)
data_dir	data saving location, default is the package data directory

Value

A list including geneset and geneset name.

Examples

x = getEnrichrdb(org = "human", library = "COVID-19_Related_Gene_Sets",
data_dir = tempdir())

geneset documentation built on Nov. 20, 2022, 9:07 a.m.