tree_plant_otl: Mega-tree of Plants based on Open Tree of Life
In megatrees: Subsets of Randomly Selected Phylogenies from Existing Mega-Phylogenies
tree_plant_otl R Documentation
Mega-tree of Plants based on Open Tree of Life
Description
This tree was based on Smith and Brown (2018), which in turn was based on the Open Tree of Life.
It was copied from 'V.PhyloMaker::GBOTB.extended'. After then, node labels were added for empty ones.
Usage
tree_plant_otl
Format
A phylogeny with class "phylo". It is also a list. Compare with a normal phylo object, it has another data frame 'tree_plant_otl$genus_family_root', which provides the root nodes information for every unique genus and family in the phylogeny. Such information can be used to insert new tips onto the phylogeny later.
Source
https://github.com/jinyizju/V.PhyloMaker/tree/master/data
References
Smith, S. A., & Brown, J. W. (2018). Constructing a broadly inclusive seed plant phylogeny. American Journal of Botany, 105(3), 302-314.
Jin, Y., & Qian, H. (2019). V. PhyloMaker: an R package that can generate very large phylogenies for vascular plants. Ecography.
megatrees documentation built on June 29, 2026, 5:06 p.m.
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| tree_plant_otl | R Documentation |
Mega-tree of Plants based on Open Tree of Life
Description
This tree was based on Smith and Brown (2018), which in turn was based on the Open Tree of Life. It was copied from 'V.PhyloMaker::GBOTB.extended'. After then, node labels were added for empty ones.
Usage
tree_plant_otl
Format
A phylogeny with class "phylo". It is also a list. Compare with a normal phylo object, it has another data frame 'tree_plant_otl$genus_family_root', which provides the root nodes information for every unique genus and family in the phylogeny. Such information can be used to insert new tips onto the phylogeny later.
Source
https://github.com/jinyizju/V.PhyloMaker/tree/master/data
References
Smith, S. A., & Brown, J. W. (2018). Constructing a broadly inclusive seed plant phylogeny. American Journal of Botany, 105(3), 302-314.
Jin, Y., & Qian, H. (2019). V. PhyloMaker: an R package that can generate very large phylogenies for vascular plants. Ecography.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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