explore: Interactively explore a SparrowResult via a shiny app

In lianos/sparrow.shiny: Provides shiny modules to visualize sparrow results

Interactively explore a SparrowResult via a shiny app

Description

This will launch a shiny application that enables exploratory analysis of the results from the different GSEA methods run within a 'SparrowResult'. This function accepts a 'SparrowResult' that will be visualized, or if run without a 'SparrowResult', the app will enable the user to upload one.

Usage

explore(x)

Arguments

x	A 'SparrowResult' object, or path to one as an *.rds. If missing, the shiny app will load without a 'SparrowResult' object to explore, and the user can upload one into the app.

Details

Reference the "shiny-sparrow" vignette for more detailed documentation of the functionality provided by this application.

Value

Returns the result from a call to [shiny::runApp()].

Examples

# vm <- sparrow::exampleExpressionSet()
# gdb <- sparrow::exampleGeneSetDb()
# sr <- sparrow::seas(vm, gdb, vm$design, methods=c('camera', 'fry'))
sr <- sparrow::exampleSparrowResult()
if (interactive()) {
  explore(sr)
}

lianos/sparrow.shiny documentation built on Oct. 12, 2023, 2:43 a.m.