format_output: Format model output as data.frame

In mrc-ide/squire: SEIR transmission model of COVID-19

Format model output as data.frame

Description

Format model output as data.frame

Usage

format_output(
  x,
  var_select = NULL,
  reduce_age = TRUE,
  combine_compartments = TRUE,
  date_0 = NULL
)

Arguments

x	squire_simulation object
var_select	Vector of compartment names, e.g. c("S", "R"). In addition a number of summary compartment can be requested. These include: "deaths" Daily Deaths "infections" Daily Infections "hospital_occupancy" Occupied Hospital Beds "ICU_occupancy" Occupied ICU Beds "hospital_demand Required Hospital Beds "ICU_demand Required ICU Beds
reduce_age	Collapse age-dimension, calculating the total in the compartment.
combine_compartments	Collapse compartments of same type together (e.g. E1 and E2 -> E)
date_0	Date of time 0, if specified a date column will be added

Value

Formatted long data.frame

mrc-ide/squire documentation built on Sept. 10, 2022, 1:11 a.m.