plotWF: Graphviz Plot Workflow

In systemPipeR: systemPipeR: NGS workflow and report generation environment

Description

Graphviz Plot Workflow

Usage

plotWF(sysargslist, plot_style = "detect", out_type = "html", out_path = "default", height = NULL, width = NULL)

Arguments

sysargslist	data frame, the standard df generated from subsetRmd function
plot_style	one of 'detect', 'none', 'linear'
out_type	choose from 'html', 'svg', 'png'
out_path	string, path of output plot, only apply from svg or png
height	int, height of svg or png in pixels, default NULL, automatic
width	int, width of svg or png in pixels, default NULL, automatic

Author(s)

Le Zhang and Daniela Cassol

Examples

## Not run: 
## Construct SYSargsList object from Rmd file
library(systemPipeRdata)
script <- system.file("extdata/workflows/rnaseq", "systemPipeRNAseq.Rmd", package="systemPipeRdata")
targets <- system.file("extdata", "targets.txt", package="systemPipeR")
dir_path <- tempdir()
SYSconfig <- initProject(projPath=dir_path, targets=targets, script=script, overwrite = TRUE)
sysargslist <- initWF(sysconfig ="SYSconfig.yml")
plotWF(sysargslist, plot_style = "none", out_type = "png")

## End(Not run)

systemPipeR documentation built on Jan. 26, 2021, 2 a.m.