AquaEnv: Integrated Development Toolbox for Aquatic Chemical Model Generation

Share:

Toolbox for the experimental aquatic chemist, focused on acidification and CO2 air-water exchange. It contains all elements to model the pH, the related CO2 air-water exchange, and aquatic acid-base chemistry for an arbitrary marine, estuarine or freshwater system. It contains a suite of tools for sensitivity analysis, visualisation, modelling of chemical batches, and can be used to build dynamic models of aquatic systems. As from version 1.0-4, it also contains functions to calculate the buffer factors.

Author
Andreas F. Hofmann, Karline Soetaert, Filip J.R. Meysman, Mathilde Hagens
Date of publication
2016-09-05 13:48:52
Maintainer
Karline Soetaert <Karline.Soetaert@nioz.nl>
License
GPL (>= 2)
Version
1.0-4

View on R-Forge

Man pages

aquaenv
aquaenv
AquaEnv_package
AquaEnv - an integrated development toolbox for aquatic...
as.data.frame.aquaenv
as.data.frame.aquaenv
BufferFactors
BufferFactors
c.aquaenv
c.aquaenv
ConcRelCl
ConcRelCl
convert
convert
DeltaPcoeffs
DeltaPcoeffs
gauge_p
gauge\_p
K0_CO2
K0\_CO2
K0_O2
K0\_O2
K_BOH3
K\_BOH3
K_CO2
K\_CO2
K_H2PO4
K\_H2PO4
K_H2S
K\_H2S
K_H3PO4
K\_H3PO4
K_HCO3
K\_HCO3
K_HF
K\_HF
K_HPO4
K\_HPO4
K_HSO4
K\_HSO4
K_NH4
K\_NH4
K_SiOH4
K\_SiOH4
K_SiOOH3
K\_SiOOH3
Ksp_aragonite
Ksp\_aragonite
Ksp_calcite
Ksp\_calcite
K_W
K\_W
length.aquaenv
length.aquaenv
MeanMolecularMass
MeanMolecularMass
merge.aquaenv
merge.aquaenv
PhysChemConst
PhysChemConst
plot.aquaenv
plot.aquaenv
sample_dickson1981
sample\_dickson1981
sample_dickson2007
sample\_dickson2007
TAfit
TAfit
Technicals
Technicals
titration
titration
watdepth
watdepth

Files in this package

AquaEnv/DESCRIPTION
AquaEnv/NAMESPACE
AquaEnv/R
AquaEnv/R/aquaenv_private_DSApHfunctions.R
AquaEnv/R/aquaenv_private_Kfunctions.R
AquaEnv/R/aquaenv_private_auxilaryfunctions.R
AquaEnv/R/aquaenv_private_pHTAfunctions.R
AquaEnv/R/aquaenv_public_applications.R
AquaEnv/R/aquaenv_public_constants.R
AquaEnv/R/aquaenv_public_mainfunctions.R
AquaEnv/build
AquaEnv/build/vignette.rds
AquaEnv/data
AquaEnv/data/sample_dickson1981.rda
AquaEnv/data/sample_dickson2007.rda
AquaEnv/demo
AquaEnv/demo/00Index
AquaEnv/demo/DSAdynamicmodel.R
AquaEnv/demo/TAfitting.R
AquaEnv/demo/basicfeatures.R
AquaEnv/demo/dynamicmodel.R
AquaEnv/demo/pHmodelling1_implicit_method.R
AquaEnv/demo/pHmodelling2_explicit_method.R
AquaEnv/demo/pHmodelling3_fractional_stoichiometry.R
AquaEnv/demo/titration.R
AquaEnv/inst
AquaEnv/inst/CITATION
AquaEnv/inst/doc
AquaEnv/inst/doc/AquaEnv-ConstantsAndFormulae.pdf
AquaEnv/inst/doc/AquaEnv-PrivateFunctions.pdf
AquaEnv/inst/doc/AquaEnv.R
AquaEnv/inst/doc/AquaEnv.pdf
AquaEnv/inst/doc/AquaEnv.rnw
AquaEnv/inst/doc/index.html
AquaEnv/man
AquaEnv/man/AquaEnv_package.Rd
AquaEnv/man/BufferFactors.Rd
AquaEnv/man/ConcRelCl.Rd
AquaEnv/man/DeltaPcoeffs.Rd
AquaEnv/man/K0_CO2.Rd
AquaEnv/man/K0_O2.Rd
AquaEnv/man/K_BOH3.Rd
AquaEnv/man/K_CO2.Rd
AquaEnv/man/K_H2PO4.Rd
AquaEnv/man/K_H2S.Rd
AquaEnv/man/K_H3PO4.Rd
AquaEnv/man/K_HCO3.Rd
AquaEnv/man/K_HF.Rd
AquaEnv/man/K_HPO4.Rd
AquaEnv/man/K_HSO4.Rd
AquaEnv/man/K_NH4.Rd
AquaEnv/man/K_SiOH4.Rd
AquaEnv/man/K_SiOOH3.Rd
AquaEnv/man/K_W.Rd
AquaEnv/man/Ksp_aragonite.Rd
AquaEnv/man/Ksp_calcite.Rd
AquaEnv/man/MeanMolecularMass.Rd
AquaEnv/man/PhysChemConst.Rd
AquaEnv/man/TAfit.Rd
AquaEnv/man/Technicals.Rd
AquaEnv/man/aquaenv.Rd
AquaEnv/man/as.data.frame.aquaenv.Rd
AquaEnv/man/c.aquaenv.Rd
AquaEnv/man/convert.Rd
AquaEnv/man/gauge_p.Rd
AquaEnv/man/length.aquaenv.Rd
AquaEnv/man/merge.aquaenv.Rd
AquaEnv/man/plot.aquaenv.Rd
AquaEnv/man/sample_dickson1981.Rd
AquaEnv/man/sample_dickson2007.Rd
AquaEnv/man/titration.Rd
AquaEnv/man/watdepth.Rd
AquaEnv/vignettes
AquaEnv/vignettes/AquaEnv.bib
AquaEnv/vignettes/AquaEnv.rnw