AquaEnv: Integrated Development Toolbox for Aquatic Chemical Model Generation

Toolbox for the experimental aquatic chemist, focused on acidification and CO2 air-water exchange. It contains all elements to model the pH, the related CO2 air-water exchange, and aquatic acid-base chemistry for an arbitrary marine, estuarine or freshwater system. It contains a suite of tools for sensitivity analysis, visualisation, modelling of chemical batches, and can be used to build dynamic models of aquatic systems. As from version 1.0-4, it also contains functions to calculate the buffer factors.

AuthorAndreas F. Hofmann, Karline Soetaert, Filip J.R. Meysman, Mathilde Hagens
Date of publication2016-09-05 13:48:52
MaintainerKarline Soetaert <Karline.Soetaert@nioz.nl>
LicenseGPL (>= 2)
Version1.0-4

View on R-Forge

Functions

aquaenv Man page
AquaEnv Man page
as.data.frame.aquaenv Man page
BufferFactors Man page
c.aquaenv Man page
ConcRelCl Man page
convert Man page
DeltaPcoeffs Man page
gauge_p Man page
K0_CO2 Man page
K0_O2 Man page
K_BOH3 Man page
K_CO2 Man page
K_H2PO4 Man page
K_H2S Man page
K_H3PO4 Man page
K_HCO3 Man page
K_HF Man page
K_HPO4 Man page
K_HSO4 Man page
K_NH4 Man page
K_SiOH4 Man page
K_SiOOH3 Man page
Ksp_aragonite Man page
Ksp_calcite Man page
K_W Man page
length.aquaenv Man page
MeanMolecularMass Man page
merge.aquaenv Man page
PhysChemConst Man page
plot.aquaenv Man page
sample_dickson1981 Man page
sample_dickson2007 Man page
TAfit Man page
Technicals Man page
titration Man page
watdepth Man page

Files

AquaEnv/DESCRIPTION
AquaEnv/NAMESPACE
AquaEnv/R
AquaEnv/R/aquaenv_private_DSApHfunctions.R AquaEnv/R/aquaenv_private_Kfunctions.R AquaEnv/R/aquaenv_private_auxilaryfunctions.R AquaEnv/R/aquaenv_private_pHTAfunctions.R AquaEnv/R/aquaenv_public_applications.R AquaEnv/R/aquaenv_public_constants.R AquaEnv/R/aquaenv_public_mainfunctions.R
AquaEnv/build
AquaEnv/build/vignette.rds
AquaEnv/data
AquaEnv/data/sample_dickson1981.rda
AquaEnv/data/sample_dickson2007.rda
AquaEnv/demo
AquaEnv/demo/00Index
AquaEnv/demo/DSAdynamicmodel.R
AquaEnv/demo/TAfitting.R
AquaEnv/demo/basicfeatures.R
AquaEnv/demo/dynamicmodel.R
AquaEnv/demo/pHmodelling1_implicit_method.R
AquaEnv/demo/pHmodelling2_explicit_method.R
AquaEnv/demo/pHmodelling3_fractional_stoichiometry.R
AquaEnv/demo/titration.R
AquaEnv/inst
AquaEnv/inst/CITATION
AquaEnv/inst/doc
AquaEnv/inst/doc/AquaEnv-ConstantsAndFormulae.pdf
AquaEnv/inst/doc/AquaEnv-PrivateFunctions.pdf
AquaEnv/inst/doc/AquaEnv.R
AquaEnv/inst/doc/AquaEnv.pdf
AquaEnv/inst/doc/AquaEnv.rnw
AquaEnv/inst/doc/index.html
AquaEnv/man
AquaEnv/man/AquaEnv_package.Rd AquaEnv/man/BufferFactors.Rd AquaEnv/man/ConcRelCl.Rd AquaEnv/man/DeltaPcoeffs.Rd AquaEnv/man/K0_CO2.Rd AquaEnv/man/K0_O2.Rd AquaEnv/man/K_BOH3.Rd AquaEnv/man/K_CO2.Rd AquaEnv/man/K_H2PO4.Rd AquaEnv/man/K_H2S.Rd AquaEnv/man/K_H3PO4.Rd AquaEnv/man/K_HCO3.Rd AquaEnv/man/K_HF.Rd AquaEnv/man/K_HPO4.Rd AquaEnv/man/K_HSO4.Rd AquaEnv/man/K_NH4.Rd AquaEnv/man/K_SiOH4.Rd AquaEnv/man/K_SiOOH3.Rd AquaEnv/man/K_W.Rd AquaEnv/man/Ksp_aragonite.Rd AquaEnv/man/Ksp_calcite.Rd AquaEnv/man/MeanMolecularMass.Rd AquaEnv/man/PhysChemConst.Rd AquaEnv/man/TAfit.Rd AquaEnv/man/Technicals.Rd AquaEnv/man/aquaenv.Rd AquaEnv/man/as.data.frame.aquaenv.Rd AquaEnv/man/c.aquaenv.Rd AquaEnv/man/convert.Rd AquaEnv/man/gauge_p.Rd AquaEnv/man/length.aquaenv.Rd AquaEnv/man/merge.aquaenv.Rd AquaEnv/man/plot.aquaenv.Rd AquaEnv/man/sample_dickson1981.Rd AquaEnv/man/sample_dickson2007.Rd AquaEnv/man/titration.Rd AquaEnv/man/watdepth.Rd
AquaEnv/vignettes
AquaEnv/vignettes/AquaEnv.bib
AquaEnv/vignettes/AquaEnv.rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.