AquaEnv: Integrated Development Toolbox for Aquatic Chemical Model Generation
Version 1.0-5

Toolbox for the experimental aquatic chemist, focused on acidification and CO2 air-water exchange. It contains all elements to model the pH, the related CO2 air-water exchange, and aquatic acid-base chemistry for an arbitrary marine, estuarine or freshwater system. It contains a suite of tools for sensitivity analysis, visualisation, modelling of chemical batches, and can be used to build dynamic models of aquatic systems. As from version 1.0-4, it also contains functions to calculate the buffer factors.

Browse man pages Browse package API and functions Browse package files

AuthorAndreas F. Hofmann, Karline Soetaert, Filip J.R. Meysman, Mathilde Hagens
Date of publication2017-03-22 10:06:57
MaintainerKarline Soetaert <Karline.Soetaert@nioz.nl>
LicenseGPL (>= 2)
Version1.0-5
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("AquaEnv", repos="http://R-Forge.R-project.org")

Man pages

aquaenv: aquaenv
AquaEnv_package: AquaEnv - an integrated development toolbox for aquatic...
as.data.frame.aquaenv: as.data.frame.aquaenv
BufferFactors: BufferFactors
c.aquaenv: c.aquaenv
ConcRelCl: ConcRelCl
convert: convert
DeltaPcoeffs: DeltaPcoeffs
gauge_p: gauge\_p
K0_CO2: K0\_CO2
K0_O2: K0\_O2
K_BOH3: K\_BOH3
K_CO2: K\_CO2
K_H2PO4: K\_H2PO4
K_H2S: K\_H2S
K_H3PO4: K\_H3PO4
K_HCO3: K\_HCO3
K_HF: K\_HF
K_HPO4: K\_HPO4
K_HSO4: K\_HSO4
K_NH4: K\_NH4
K_SiOH4: K\_SiOH4
K_SiOOH3: K\_SiOOH3
Ksp_aragonite: Ksp\_aragonite
Ksp_calcite: Ksp\_calcite
K_W: K\_W
length.aquaenv: length.aquaenv
MeanMolecularMass: MeanMolecularMass
merge.aquaenv: merge.aquaenv
PhysChemConst: PhysChemConst
plot.aquaenv: plot.aquaenv
sample_dickson1981: sample\_dickson1981
sample_dickson2007: sample\_dickson2007
TAfit: TAfit
Technicals: Technicals
titration: titration
watdepth: watdepth

Functions

Abi Source code
AquaEnv Man page
Atri Source code
Auni Source code
BufferFactors Man page Source code
Cl Source code
ConcRelCl Man page
DeltaPcoeffs Man page
H2Abi Source code
H2Atri Source code
H3Atri Source code
HAbi Source code
HAtri Source code
HAuni Source code
I Source code
Iterms Source code
K0_CO2 Man page Source code
K0_O2 Man page Source code
K_BOH3 Man page Source code
K_CO2 Man page Source code
K_CO2_lueker Source code
K_CO2_millero Source code
K_H2PO4 Man page Source code
K_H2S Man page Source code
K_H3PO4 Man page Source code
K_HCO3 Man page Source code
K_HCO3_lueker Source code
K_HCO3_millero Source code
K_HF Man page Source code
K_HF_perez Source code
K_HPO4 Man page Source code
K_HSO4 Man page Source code
K_HSO4_khoo Source code
K_NH4 Man page Source code
K_SiOH4 Man page Source code
K_SiOOH3 Man page Source code
K_W Man page Source code
Ksp_aragonite Man page Source code
Ksp_calcite Man page Source code
MeanMolecularMass Man page
PhysChemConst Man page
Sterms Source code
TAfit Man page Source code
Technicals Man page
aquaenv Man page Source code
as.data.frame.aquaenv Man page Source code
att Source code
basicplot Source code
bjerrumplot Source code
c.aquaenv Man page Source code
calcH_CO2 Source code
calcH_TA Source code
calcSumCO2_TA_CO2 Source code
calcSumCO2_pH_CO2 Source code
calcSumCO2_pH_TA Source code
calcTA Source code
calcTAMinor Source code
cloneaquaenv Source code
convert Man page Source code
convert.aquaenv Source code
convert.standard Source code
cumulativeplot Source code
dAdH_bi Source code
dAdH_tri Source code
dAdH_uni Source code
dH2AdH_bi Source code
dH2AdH_tri Source code
dH3AdH_tri Source code
dHAdH_bi Source code
dHAdH_tri Source code
dHAdH_uni Source code
dTAdH Source code
dTAdKdKdS Source code
dTAdKdKdSumH2SO4 Source code
dTAdKdKdSumHF Source code
dTAdKdKdT Source code
dTAdKdKdp Source code
deltaPlnK Source code
from.data.frame Source code
gauge_p Man page Source code
length.aquaenv Man page Source code
lnK Source code
logK Source code
merge.aquaenv Man page Source code
molal2molin Source code
opendevice Source code
plot.aquaenv Man page Source code
plotall Source code
revelle Source code
sample_dickson1981 Man page
sample_dickson2007 Man page
scaleconvert Source code
seaconc Source code
seadensity Source code
selectplot Source code
splitS_K_CO2 Source code
splitS_K_HCO3 Source code
titration Man page Source code
watdepth Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/aquaenv_private_DSApHfunctions.R
R/aquaenv_private_Kfunctions.R
R/aquaenv_private_auxilaryfunctions.R
R/aquaenv_private_pHTAfunctions.R
R/aquaenv_public_applications.R
R/aquaenv_public_constants.R
R/aquaenv_public_mainfunctions.R
build
build/vignette.rds
data
data/sample_dickson1981.rda
data/sample_dickson2007.rda
demo
demo/00Index
demo/DSAdynamicmodel.R
demo/TAfitting.R
demo/basicfeatures.R
demo/dynamicmodel.R
demo/pHmodelling1_implicit_method.R
demo/pHmodelling2_explicit_method.R
demo/pHmodelling3_fractional_stoichiometry.R
demo/titration.R
inst
inst/CITATION
inst/doc
inst/doc/AquaEnv-ConstantsAndFormulae.pdf
inst/doc/AquaEnv-PrivateFunctions.pdf
inst/doc/AquaEnv.R
inst/doc/AquaEnv.pdf
inst/doc/AquaEnv.rnw
inst/doc/index.html
man
man/AquaEnv_package.Rd
man/BufferFactors.Rd
man/ConcRelCl.Rd
man/DeltaPcoeffs.Rd
man/K0_CO2.Rd
man/K0_O2.Rd
man/K_BOH3.Rd
man/K_CO2.Rd
man/K_H2PO4.Rd
man/K_H2S.Rd
man/K_H3PO4.Rd
man/K_HCO3.Rd
man/K_HF.Rd
man/K_HPO4.Rd
man/K_HSO4.Rd
man/K_NH4.Rd
man/K_SiOH4.Rd
man/K_SiOOH3.Rd
man/K_W.Rd
man/Ksp_aragonite.Rd
man/Ksp_calcite.Rd
man/MeanMolecularMass.Rd
man/PhysChemConst.Rd
man/TAfit.Rd
man/Technicals.Rd
man/aquaenv.Rd
man/as.data.frame.aquaenv.Rd
man/c.aquaenv.Rd
man/convert.Rd
man/gauge_p.Rd
man/length.aquaenv.Rd
man/merge.aquaenv.Rd
man/plot.aquaenv.Rd
man/sample_dickson1981.Rd
man/sample_dickson2007.Rd
man/titration.Rd
man/watdepth.Rd
vignettes
vignettes/AquaEnv.bib
vignettes/AquaEnv.rnw
AquaEnv documentation built on May 21, 2017, 12:57 a.m.