BAPC: Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA

Package implementing Bayesian age-period-cohort models with the focus on projections. BAPC uses integrated nested Laplace approximations (INLA) for full Bayesian inference. BAPC generates age-specific and age-standardized projected rates. When interest lies in the predictive distribution, Poisson noise is automatically added. The INLA package can be obtained from http://www.r-inla.org . We recommend the testing version, which can be downloaded by running: install.packages("INLA", repos="http://www.math.ntnu.no/inla/R/testing").

AuthorAndrea Riebler <andrea.riebler@math.ntnu.no> and Leonhard Held <leonhard.held@ifspm.uzh.ch>
Date of publication2016-05-31 18:40:28
MaintainerAndrea Riebler <andrea.riebler@math.ntnu.no>
LicenseLGPL (>2)
Version0.0.33

View on R-Forge

Functions

ageindex Man page
ageindex,APCList-method Man page
agelabels Man page
agelabels<- Man page
agelabels<-,APCList-method Man page
agelabels,APCList-method Man page
agespec.proj Man page
agespec.proj<- Man page
agespec.proj<-,APCList-method Man page
agespec.proj,APCList-method Man page
agespec.rate Man page
agespec.rate<- Man page
agespec.rate<-,APCList-method Man page
agespec.rate,APCList-method Man page
agestd.proj Man page
agestd.proj<- Man page
agestd.proj<-,APCList-method Man page
agestd.proj,APCList-method Man page
agestd.rate Man page
agestd.rate<- Man page
agestd.rate<-,APCList-method Man page
agestd.rate,APCList-method Man page
APCList Man page
[,APCList,ANY,ANY,ANY-method Man page
APCList-class Man page
APCList,data.frame,data.frame,numeric-method Man page
BAPC Man page
cohortindex Man page
cohortindex<- Man page
cohortindex<-,APCList-method Man page
cohortindex,APCList-method Man page
cohortlabels Man page
cohortlabels<- Man page
cohortlabels<-,APCList-method Man page
cohortlabels,APCList-method Man page
epi Man page
epi,APCList-method Man page
FemLCSweden Man page
FemPYSweden Man page
gridfactor Man page
gridfactor,APCList-method Man page
inlares Man page
inlares<- Man page
inlares<-,APCList-method Man page
inlares,APCList-method Man page
nage Man page
nage,APCList-method Man page
ncohort Man page
ncohort,APCList-method Man page
nperiod Man page
nperiod,APCList-method Man page
overdisindex Man page
overdisindex<- Man page
overdisindex<-,APCList-method Man page
overdisindex,APCList-method Man page
periodindex Man page
periodindex<- Man page
periodindex<-,APCList-method Man page
periodindex,APCList-method Man page
periodlabels Man page
periodlabels<- Man page
periodlabels<-,APCList-method Man page
periodlabels,APCList-method Man page
plotBAPC Man page
pyrs Man page
pyrs,APCList-method Man page
qapc Man page
ratesByAge Man page
stdobs Man page
stdobs<- Man page
stdobs<-,APCList-method Man page
stdobs,APCList-method Man page
stdweight Man page
stdweight<- Man page
stdweight<-,APCList-method Man page
stdweight,APCList-method Man page
whostandard Man page

Files

BAPC/DESCRIPTION
BAPC/NAMESPACE
BAPC/R
BAPC/R/BAPC.r
BAPC/R/bapcClass.r
BAPC/R/plotBAPC.r
BAPC/R/qapc.R
BAPC/R/ratesByAge.r
BAPC/R/utils.r
BAPC/data
BAPC/data/FemLCSweden.rda
BAPC/data/FemPYSweden.rda
BAPC/data/whostandard.rda
BAPC/inst
BAPC/inst/CITATION
BAPC/man
BAPC/man/BAPC.Rd BAPC/man/BAPCList-class.Rd BAPC/man/FemLCSweden.Rd BAPC/man/FemPYSweden.Rd BAPC/man/plotBAPC.Rd BAPC/man/qapc.Rd BAPC/man/ratesByAge.Rd BAPC/man/whostandard.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.