BAPC: Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA
Version 0.0.33

Package implementing Bayesian age-period-cohort models with the focus on projections. BAPC uses integrated nested Laplace approximations (INLA) for full Bayesian inference. BAPC generates age-specific and age-standardized projected rates. When interest lies in the predictive distribution, Poisson noise is automatically added. The INLA package can be obtained from http://www.r-inla.org . We recommend the testing version, which can be downloaded by running: install.packages("INLA", repos="http://www.math.ntnu.no/inla/R/testing").

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AuthorAndrea Riebler <andrea.riebler@math.ntnu.no> and Leonhard Held <leonhard.held@ifspm.uzh.ch>
Date of publication2016-05-31 18:40:28
MaintainerAndrea Riebler <andrea.riebler@math.ntnu.no>
LicenseLGPL (>2)
Version0.0.33
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BAPC", repos="http://R-Forge.R-project.org")

Man pages

BAPC: Function to project age-specific mortality or disease rates...
BAPCList-class: Class '"APCList"'
FemLCSweden: Lung cancer data for females in Sweden
FemPYSweden: Population estimate for females in Sweden
plotBAPC: Function to plot age-specific and/or agestandardized rates...
qapc: Function to compute quantiles for age-specific (and...
ratesByAge: Function to plot age-specific incidence or mortality rates...
whostandard: WHO world standard population

Functions

APCList Man page
APCList,data.frame,data.frame,numeric-method Man page
APCList-class Man page
BAPC Man page Source code
FemLCSweden Man page
FemPYSweden Man page
[,APCList,ANY,ANY,ANY-method Man page
ageindex Man page
ageindex,APCList-method Man page
agelabels Man page
agelabels,APCList-method Man page
agelabels<- Man page
agelabels<-,APCList-method Man page
agespec.proj Man page
agespec.proj,APCList-method Man page
agespec.proj<- Man page
agespec.proj<-,APCList-method Man page
agespec.rate Man page
agespec.rate,APCList-method Man page
agespec.rate<- Man page
agespec.rate<-,APCList-method Man page
agestd.proj Man page
agestd.proj,APCList-method Man page
agestd.proj<- Man page
agestd.proj<-,APCList-method Man page
agestd.rate Man page
agestd.rate,APCList-method Man page
agestd.rate<- Man page
agestd.rate<-,APCList-method Man page
checkmodel Source code
checkoverdis Source code
cohortindex Man page
cohortindex,APCList-method Man page
cohortindex<- Man page
cohortindex<-,APCList-method Man page
cohortlabels Man page
cohortlabels,APCList-method Man page
cohortlabels<- Man page
cohortlabels<-,APCList-method Man page
cor2cov Source code
epi Man page
epi,APCList-method Man page
get_predictions Source code
gridfactor Man page
gridfactor,APCList-method Man page
inlares Man page
inlares,APCList-method Man page
inlares<- Man page
inlares<-,APCList-method Man page
nage Man page
nage,APCList-method Man page
ncohort Man page
ncohort,APCList-method Man page
nperiod Man page
nperiod,APCList-method Man page
overdisindex Man page
overdisindex,APCList-method Man page
overdisindex<- Man page
overdisindex<-,APCList-method Man page
periodindex Man page
periodindex,APCList-method Man page
periodindex<- Man page
periodindex<-,APCList-method Man page
periodlabels Man page
periodlabels,APCList-method Man page
periodlabels<- Man page
periodlabels<-,APCList-method Man page
plotBAPC Man page Source code
predict_dist Source code
pyrs Man page
pyrs,APCList-method Man page
qapc Man page Source code
ratesByAge Man page Source code
stdobs Man page
stdobs,APCList-method Man page
stdobs<- Man page
stdobs<-,APCList-method Man page
stdweight Man page
stdweight,APCList-method Man page
stdweight<- Man page
stdweight<-,APCList-method Man page
transform_linearPredictor Source code
whostandard Man page

Files

DESCRIPTION
NAMESPACE
R
R/BAPC.r
R/bapcClass.r
R/plotBAPC.r
R/qapc.R
R/ratesByAge.r
R/utils.r
data
data/FemLCSweden.rda
data/FemPYSweden.rda
data/whostandard.rda
inst
inst/CITATION
man
man/BAPC.Rd
man/BAPCList-class.Rd
man/FemLCSweden.Rd
man/FemPYSweden.Rd
man/plotBAPC.Rd
man/qapc.Rd
man/ratesByAge.Rd
man/whostandard.Rd
BAPC documentation built on May 21, 2017, 12:30 a.m.