BCE: Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
Version 2.1

Function to estimates taxonomic compositions from biomarker data, using a Bayesian approach.

AuthorKarel Van den Meersche <karel.van_den_meersche@cirad.fr>, Karline Soetaert <karline.soetaert@nioz.nl>
Date of publication2014-05-22 15:06:28
MaintainerKarel Van den Meersche <karel.van_den_meersche@cirad.fr>
LicenseGPL (>= 2)
Version2.1
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BCE", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

bce1: Bayesian Composition Estimator
bceInput: ratiomatrix and datamatrix for demonstration of BCE().
BCE-package: The Bayesian Compositional Estimator Package
export.bce: export BCE
rescaleRows: rescale rows
summary.bce: summary BCE
tlsce: Total Least Squares Composition Estimator
See all...

All man pages Function index File listing

Man pages

bce1: Bayesian Composition Estimator
BCE-1_5: Bayesian Composition Estimator
bceInput: ratiomatrix and datamatrix for demonstration of BCE().
bceOutput: bce output generated by running the bceInput example
BCE-package: The Bayesian Compositional Estimator Package
export.bce: export BCE
pairs.bce: Pairs plot of a BCE
plot.bce: plot BCE
rescaleRows: rescale rows
summary.bce: summary BCE
tlsce: Total Least Squares Composition Estimator

Functions

BCE Man page Source code
BCE-package Man page
LSEI Source code
bce Man page
bce1 Man page Source code
bceInput Man page
bceOutput Man page
export Source code
export.bce Man page Source code
init Source code
logProbabilityBCE Source code
logddirichlet2 Source code
lsei1 Source code
lsei2 Source code
pairs.bce Man page Source code
panel.cor Source code
plot.bce Man page Source code
rdirichlet2 Source code
rescaleRows Man page Source code
summary.bce Man page Source code
tlsce Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/BCE-1_5.R
R/bce1.R
R/pairs.bce.R
R/summary.bce.R
R/tlsce.R
data
data/bceInput.rda
data/bceOutput.rda
data/datalist
inst
inst/doc
inst/doc/BCE-manual.pdf
man
man/BCE-1_5.Rd
man/BCE-package.Rd
man/bce1.Rd
man/bceInput.Rd
man/bceOutput.rd
man/export.bce.Rd
man/pairs.bce.Rd
man/plot.bce.Rd
man/rescaleRows.Rd
man/summary.bce.Rd
man/tlsce.Rd
BCE documentation built on May 21, 2017, 3:52 a.m.

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