BCE-package: The Bayesian Compositional Estimator Package

In BCE: Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data

The Bayesian Compositional Estimator Package

Description

Functions that estimate sample (taxonomic) composition from biomarker data

bce1 estimates probability distributions of a sample composition based on an input ratio matrix, A, containing biomarker ratios in (field) samples, and an input data matrix, B, containing the biomarker ratios for several taxonomic groups

tlsce estimates the total least squares solution

This version differs from the previous version <2 in that a different MCMC method is used that shows better convergence properties and has a more sound underlying statistical model.

Details

Package:	BCE
Type:	Package
License:	GNU Public License 2 or above

Author(s)

Karel Van den Meersche (Maintainer)

Karline Soetaert

References

Van den Meersche, K., K. Soetaert and J.J. Middelburg (2008) A Bayesian compositional estimator for microbial taxonomy based on biomarkers, Limnology and Oceanography Methods 6, 190-199

See Also

bce the new function, with better convergence properties

BCE the original function (versions < 2)

tlsce total least squares compositional estimator

Examples

## Not run: 
## show examples (see respective help pages for details)
example(bce)
example(tlsce)

## show package vignette
browseURL(paste(system.file(package = "BCE"), "/doc", sep = ""))

## End(Not run)

BCE documentation built on May 12, 2022, 3 a.m.