BcDiag: Diagnostics Plots for Bicluster Data

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Diagnostic tools based on two-way anova and median-polish residual plots for Bicluster output obtained from packages; "biclust" by Kaiser et al.(2008),"isa2" by Csardi et al. (2010) and "fabia" by Hochreiter et al. (2010). Moreover, It provides visualization tools for bicluster output and corresponding non-bicluster rows- or columns outcomes. It has also extended the idea of Kaiser et al.(2008) which is, extracting bicluster output in a text format, by adding two bicluster methods from the fabia and isa2 R packages.

Author
Aregay Mengsteab, Martin Otava, Tatsiana Khamiakova, Ewoud De Troyer
Date of publication
2015-10-16 20:54:29
Maintainer
Ewoud De Troyer <ewoud.detroyer@uhasselt.be>
License
GPL-3
Version
1.0.10

View on R-Forge

Man pages

anomedOnlybic
The anomedOnlybic function
BcDiag
The BCDiag package
breastc
Gene Expression Data Example
dlbcl
Gene Expression Data Example
exploreBic
The exploreBic function
exploreOnlybic
The exploreOnlybic function
profileBic
The profileBic function.
writeBic
The writeBic function

Files in this package

BcDiag/DESCRIPTION
BcDiag/NAMESPACE
BcDiag/R
BcDiag/R/anomedOnlybic.R
BcDiag/R/exploreBic.R
BcDiag/R/exploreOnlybic.R
BcDiag/R/profileBic.R
BcDiag/R/support.R
BcDiag/R/writeBic.R
BcDiag/data
BcDiag/data/breastc.rda
BcDiag/data/dlbcl.rda
BcDiag/man
BcDiag/man/BcDiag.Rd
BcDiag/man/anomedOnlybic.Rd
BcDiag/man/breastc.Rd
BcDiag/man/dlbcl.Rd
BcDiag/man/exploreBic.Rd
BcDiag/man/exploreOnlybic.Rd
BcDiag/man/profileBic.Rd
BcDiag/man/writeBic.Rd