Description Usage Arguments Details Value Author(s) References See Also Examples
Provides a summary output in a text format, extracted from 'biclust','isa2' and 'fabia' bicluster algorithms.
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dset |
data matrix |
fileName |
the name of the bicluster file to be saved. |
bicResult |
bicluster result obtained from 'biclust','isa2' or 'fabia' |
bicname |
the title to be given for the biclustered data. |
mname |
method name; 'biclust', 'isa2', 'fabia' or 'bicare' |
append |
logical value; TRUE as default |
delimiter |
delimiter in created output file; default value is " ". |
fabia.thresZ |
Bicluster threshold for |
fabia.thresL |
Bicluster threshold for |
The original function was developed in 'biclust' package by Kaiser et.al (2008). We extend the function to be used for further bicluster algorithms, such as; 'isa2', 'fabia' and 'bicare'.
Note that the "biclust"
option for mname
will also accept results from the packages iBBiG and rqubic.
Biclustered text file with title, total number of biclustered, dimension and name of the biclustered genes(rows) or conditions(columns).
Mengsteab Aregay
Van't Veer, L.J., Dai, H., van de Vijver, M.J., He, Y.D., Hart, A.A. et al. (2002). Gene expression profiling predicts clinical outcome of breast cancer,Nature, 415, 530-536.
Kaiser S. and Leisch F. (2008). A Toolbox for Bicluster Analysis in R. Ludwigstrasse. 33.
Csardi G., Kutalik Z., and Bergmann S.(2010). Modular analysis of gene expression data with R. Bioinformatics, 26, 1376-7
biclust
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