CALIBERdatamanage: Data Management Tools for CALIBER Datasets

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Data management tools for CALIBER datasets of electronic health records. The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).

Author
Anoop Shah [aut, cre], Harry Hemingway [ths], Aroon Hingorani [ths], Owen Nicholas [ths]
Date of publication
2015-05-27 12:50:23
Maintainer
Anoop Shah <anoop@doctors.org.uk>
License
GPL-3
Version
0.1-13

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Man pages

addCategoryToCohort
Creates one row per patient from repeated categorical data
addCodelistToCohort
Adds information from categories based on a codelist
addToCohort
Generate a variable from repeat measures
as.data.table.ffdf
S3 methods to convert between FFDF and data.table
CALIBERdatamanage-package
Data Management Tools for CALIBER Datasets
chooseByPriority
Chooses an item from a vector according to a defined priority...
cohort
S3 class for cohort datasets (one row per patient)
cohortmethods
Functions for handling cohort objects
convertDates
Converts all date columns in a data.table from character to...
exportTable
Export a LaTeX table to file
extractCodes
Extract subset of data according to medcode (Read code),...
extractEntity
Extract and decode data from a CPRD GOLD format dataset
formatting
Format numerical results for export tables
importDT
Import a file to data.table
importFFDF
Import a file to flat file data.frame (FFDF)
istrue
Whether a vector is TRUE or FALSE, ignoring missing values
modifyDescription
Modify the description table for a data.frame, ffdf,...
multiforest
Produce multiple forest plots side by side
removeColumn
Remove columns from a cohort object
sdcToDate
Convert CPRD special date formats to IDate
setnames
Modify column names for ffdf, cohort or data.table objects
summaryStats
Calculate and format summary statistics
summaryTable
Create a publication summary table from a template
test_data
Sample CPRD GOLD format data
test_entity
Sample subset of the CPRD entity table
test_import
Test dataset for import functions
test_lookups
Sample lookups table
test_multiforest
Sample output specificaton for forest plot
test_multiforest2
Test data for multiforest function
textToDate
Convert dates in a wide variety of formats to IDate
transferVariables
Transfer variables from one dataset to another

Files in this package

CALIBERdatamanage/DESCRIPTION
CALIBERdatamanage/NAMESPACE
CALIBERdatamanage/NEWS
CALIBERdatamanage/R
CALIBERdatamanage/R/addCategoryToCohort.R
CALIBERdatamanage/R/addCodelistToCohort.R
CALIBERdatamanage/R/addToCohort.R
CALIBERdatamanage/R/as.data.table.ffdf.R
CALIBERdatamanage/R/chooseByPriority.R
CALIBERdatamanage/R/cohort.R
CALIBERdatamanage/R/convertDates.R
CALIBERdatamanage/R/extractCodes.R
CALIBERdatamanage/R/extractEntity.R
CALIBERdatamanage/R/extractMedcodes.R
CALIBERdatamanage/R/formatting.R
CALIBERdatamanage/R/importDT.R
CALIBERdatamanage/R/importFFDF.R
CALIBERdatamanage/R/istrue.R
CALIBERdatamanage/R/modifyDescription.R
CALIBERdatamanage/R/multiforest.R
CALIBERdatamanage/R/removeColumns.R
CALIBERdatamanage/R/sdcToDate.R
CALIBERdatamanage/R/setnames.R
CALIBERdatamanage/R/summaryTable.R
CALIBERdatamanage/R/textToDate.R
CALIBERdatamanage/R/transferVariables.R
CALIBERdatamanage/data
CALIBERdatamanage/data/test_data.csv.gz
CALIBERdatamanage/data/test_entity.csv.gz
CALIBERdatamanage/data/test_import.csv.gz
CALIBERdatamanage/data/test_lookups.csv.gz
CALIBERdatamanage/data/test_multiforest.csv.gz
CALIBERdatamanage/data/test_multiforest2.csv.gz
CALIBERdatamanage/demo
CALIBERdatamanage/demo/00Index
CALIBERdatamanage/demo/makelookups.R
CALIBERdatamanage/inst
CALIBERdatamanage/inst/doc
CALIBERdatamanage/inst/doc/Rdatatable.html
CALIBERdatamanage/inst/doc/datamanage_example.html
CALIBERdatamanage/inst/doc/index.html
CALIBERdatamanage/man
CALIBERdatamanage/man/CALIBERdatamanage-package.Rd
CALIBERdatamanage/man/addCategoryToCohort.Rd
CALIBERdatamanage/man/addCodelistToCohort.Rd
CALIBERdatamanage/man/addToCohort.Rd
CALIBERdatamanage/man/as.data.table.ffdf.Rd
CALIBERdatamanage/man/chooseByPriority.Rd
CALIBERdatamanage/man/cohort.Rd
CALIBERdatamanage/man/cohortmethods.Rd
CALIBERdatamanage/man/convertDates.Rd
CALIBERdatamanage/man/exportTable.Rd
CALIBERdatamanage/man/extractCodes.Rd
CALIBERdatamanage/man/extractEntity.Rd
CALIBERdatamanage/man/formatting.Rd
CALIBERdatamanage/man/importDT.Rd
CALIBERdatamanage/man/importFFDF.Rd
CALIBERdatamanage/man/istrue.Rd
CALIBERdatamanage/man/modifyDescription.Rd
CALIBERdatamanage/man/multiforest.Rd
CALIBERdatamanage/man/removeColumn.Rd
CALIBERdatamanage/man/sdcToDate.Rd
CALIBERdatamanage/man/setnames.Rd
CALIBERdatamanage/man/summaryStats.Rd
CALIBERdatamanage/man/summaryTable.Rd
CALIBERdatamanage/man/test_data.Rd
CALIBERdatamanage/man/test_entity.Rd
CALIBERdatamanage/man/test_import.Rd
CALIBERdatamanage/man/test_lookups.Rd
CALIBERdatamanage/man/test_multiforest.Rd
CALIBERdatamanage/man/test_multiforest2.Rd
CALIBERdatamanage/man/textToDate.Rd
CALIBERdatamanage/man/transferVariables.Rd