CALIBERdatamanage: Data Management Tools for CALIBER Datasets

Data management tools for CALIBER datasets of electronic health records. The CALIBER programme is funded by the Wellcome Trust (086091/Z/08/Z) and the National Institute for Health Research (NIHR) under its Programme Grants for Applied Research programme (RP-PG-0407-10314). The author is supported by a Wellcome Trust Clinical Research Training Fellowship (0938/30/Z/10/Z).

AuthorAnoop Shah [aut, cre], Harry Hemingway [ths], Aroon Hingorani [ths], Owen Nicholas [ths]
Date of publication2015-05-27 12:50:23
MaintainerAnoop Shah <anoop@doctors.org.uk>
LicenseGPL-3
Version0.1-13

View on R-Forge

Man pages

addCategoryToCohort: Creates one row per patient from repeated categorical data

addCodelistToCohort: Adds information from categories based on a codelist

addToCohort: Generate a variable from repeat measures

as.data.table.ffdf: S3 methods to convert between FFDF and data.table

CALIBERdatamanage-package: Data Management Tools for CALIBER Datasets

chooseByPriority: Chooses an item from a vector according to a defined priority...

cohort: S3 class for cohort datasets (one row per patient)

cohortmethods: Functions for handling cohort objects

convertDates: Converts all date columns in a data.table from character to...

exportTable: Export a LaTeX table to file

extractCodes: Extract subset of data according to medcode (Read code),...

extractEntity: Extract and decode data from a CPRD GOLD format dataset

formatting: Format numerical results for export tables

importDT: Import a file to data.table

importFFDF: Import a file to flat file data.frame (FFDF)

istrue: Whether a vector is TRUE or FALSE, ignoring missing values

modifyDescription: Modify the description table for a data.frame, ffdf,...

multiforest: Produce multiple forest plots side by side

removeColumn: Remove columns from a cohort object

sdcToDate: Convert CPRD special date formats to IDate

setnames: Modify column names for ffdf, cohort or data.table objects

summaryStats: Calculate and format summary statistics

summaryTable: Create a publication summary table from a template

test_data: Sample CPRD GOLD format data

test_entity: Sample subset of the CPRD entity table

test_import: Test dataset for import functions

test_lookups: Sample lookups table

test_multiforest: Sample output specificaton for forest plot

test_multiforest2: Test data for multiforest function

textToDate: Convert dates in a wide variety of formats to IDate

transferVariables: Transfer variables from one dataset to another

Files in this package

CALIBERdatamanage/DESCRIPTION
CALIBERdatamanage/NAMESPACE
CALIBERdatamanage/NEWS
CALIBERdatamanage/R
CALIBERdatamanage/R/addCategoryToCohort.R CALIBERdatamanage/R/addCodelistToCohort.R CALIBERdatamanage/R/addToCohort.R CALIBERdatamanage/R/as.data.table.ffdf.R CALIBERdatamanage/R/chooseByPriority.R CALIBERdatamanage/R/cohort.R CALIBERdatamanage/R/convertDates.R CALIBERdatamanage/R/extractCodes.R CALIBERdatamanage/R/extractEntity.R CALIBERdatamanage/R/extractMedcodes.R CALIBERdatamanage/R/formatting.R CALIBERdatamanage/R/importDT.R CALIBERdatamanage/R/importFFDF.R CALIBERdatamanage/R/istrue.R CALIBERdatamanage/R/modifyDescription.R CALIBERdatamanage/R/multiforest.R CALIBERdatamanage/R/removeColumns.R CALIBERdatamanage/R/sdcToDate.R CALIBERdatamanage/R/setnames.R CALIBERdatamanage/R/summaryTable.R CALIBERdatamanage/R/textToDate.R CALIBERdatamanage/R/transferVariables.R
CALIBERdatamanage/data
CALIBERdatamanage/data/test_data.csv.gz
CALIBERdatamanage/data/test_entity.csv.gz
CALIBERdatamanage/data/test_import.csv.gz
CALIBERdatamanage/data/test_lookups.csv.gz
CALIBERdatamanage/data/test_multiforest.csv.gz
CALIBERdatamanage/data/test_multiforest2.csv.gz
CALIBERdatamanage/demo
CALIBERdatamanage/demo/00Index
CALIBERdatamanage/demo/makelookups.R
CALIBERdatamanage/inst
CALIBERdatamanage/inst/doc
CALIBERdatamanage/inst/doc/Rdatatable.html
CALIBERdatamanage/inst/doc/datamanage_example.html
CALIBERdatamanage/inst/doc/index.html
CALIBERdatamanage/man
CALIBERdatamanage/man/CALIBERdatamanage-package.Rd CALIBERdatamanage/man/addCategoryToCohort.Rd CALIBERdatamanage/man/addCodelistToCohort.Rd CALIBERdatamanage/man/addToCohort.Rd CALIBERdatamanage/man/as.data.table.ffdf.Rd CALIBERdatamanage/man/chooseByPriority.Rd CALIBERdatamanage/man/cohort.Rd CALIBERdatamanage/man/cohortmethods.Rd CALIBERdatamanage/man/convertDates.Rd CALIBERdatamanage/man/exportTable.Rd CALIBERdatamanage/man/extractCodes.Rd CALIBERdatamanage/man/extractEntity.Rd CALIBERdatamanage/man/formatting.Rd CALIBERdatamanage/man/importDT.Rd CALIBERdatamanage/man/importFFDF.Rd CALIBERdatamanage/man/istrue.Rd CALIBERdatamanage/man/modifyDescription.Rd CALIBERdatamanage/man/multiforest.Rd CALIBERdatamanage/man/removeColumn.Rd CALIBERdatamanage/man/sdcToDate.Rd CALIBERdatamanage/man/setnames.Rd CALIBERdatamanage/man/summaryStats.Rd CALIBERdatamanage/man/summaryTable.Rd CALIBERdatamanage/man/test_data.Rd CALIBERdatamanage/man/test_entity.Rd CALIBERdatamanage/man/test_import.Rd CALIBERdatamanage/man/test_lookups.Rd CALIBERdatamanage/man/test_multiforest.Rd CALIBERdatamanage/man/test_multiforest2.Rd CALIBERdatamanage/man/textToDate.Rd CALIBERdatamanage/man/transferVariables.Rd

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