ClassComparison: Classes and Methods for "Class Comparison" Problems on Microarrays

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The ClassComparison package defines the classes used for "class comparison" problems in the OOMPA project. Class comparison includes tests for differential expression; see Simon's book for details on typical problem types.

Author
Kevin R. Coombes
Date of publication
2016-05-09 20:45:21
Maintainer
Kevin R. Coombes <krc@silicovore.com>
License
Apache License (== 2.0)
Version
3.1.3
URLs

View on R-Forge

Man pages

cc00-0-Bum-class
Class "Bum"
cc00-1-BumSummary-class
Class "BumSummary"
cc00-2-significant-method
Generic Methods for Significance
cc01-0-MultiTtest-class
Class "MultiTtest"
cc01-1-variantT-class
Classes for Variant T-tests
cc02-0-MultiWilcoxonTest-class
Class "MultiWilcoxonTest"
cc02-1-dwil
Wilcoxon Density Function
cc02-2-rankSum
Wilcoxon Rank-Sum Statistic
cc03-0-MultiLinearModel-class
Class "MultiLinearModel"
cc04-0-Dudoit-class
Class "Dudoit"
cc05-0-TNoM-class
Classes "TNoM" and "fullTNoM"
cc05-1-TNoMSummary-class
Class "TNoMSummary"
cc06-0-Sam-class
Class "Sam"
cc06-1-SamSummary-class
Class "SamSummary"
cc07-0-TwoGroupStats-class
Class "TwoGroupStats"
cc08-0-SingleGroup-class
Class "SingleGroup"
cc09-0-SmoothTtest-class
Class "SmoothTtest"

Files in this package

ClassComparison/DESCRIPTION
ClassComparison/NAMESPACE
ClassComparison/NEWS
ClassComparison/R
ClassComparison/R/cc00-bum.R
ClassComparison/R/cc01-ttest.R
ClassComparison/R/cc02-EfronTibshirani.R
ClassComparison/R/cc03-fastlm.R
ClassComparison/R/cc04-Dudoit.R
ClassComparison/R/cc05-tnom.R
ClassComparison/R/cc06-Sam.R
ClassComparison/R/cc07-twoGroupStats.R
ClassComparison/R/cc08-singleGroup.R
ClassComparison/R/cc09-smoothT.R
ClassComparison/R/cc10-pairedT.R
ClassComparison/TODO
ClassComparison/build
ClassComparison/build/vignette.rds
ClassComparison/inst
ClassComparison/inst/doc
ClassComparison/inst/doc/oompa-cc.R
ClassComparison/inst/doc/oompa-cc.Rnw
ClassComparison/inst/doc/oompa-cc.pdf
ClassComparison/inst/samples
ClassComparison/inst/samples/exprSet-example.R
ClassComparison/inst/samples/test00-BUM.R
ClassComparison/inst/samples/test01-ttest.R
ClassComparison/inst/samples/test02-eb.R
ClassComparison/inst/samples/test03-lm.R
ClassComparison/inst/samples/test04-dudoit.R
ClassComparison/inst/samples/test05-tnom.R
ClassComparison/inst/samples/test06-sam.R
ClassComparison/inst/samples/test07-twoGroupStats.R
ClassComparison/inst/samples/test08-singleGroup.R
ClassComparison/inst/samples/test09-smoothT.R
ClassComparison/inst/samples/test10-Tvariant.R
ClassComparison/man
ClassComparison/man/cc00-0-Bum-class.Rd
ClassComparison/man/cc00-1-BumSummary-class.Rd
ClassComparison/man/cc00-2-significant-method.Rd
ClassComparison/man/cc01-0-MultiTtest-class.Rd
ClassComparison/man/cc01-1-variantT-class.Rd
ClassComparison/man/cc02-0-MultiWilcoxonTest-class.Rd
ClassComparison/man/cc02-1-dwil.Rd
ClassComparison/man/cc02-2-rankSum.Rd
ClassComparison/man/cc03-0-MultiLinearModel-class.Rd
ClassComparison/man/cc04-0-Dudoit-class.Rd
ClassComparison/man/cc05-0-TNoM-class.Rd
ClassComparison/man/cc05-1-TNoMSummary-class.Rd
ClassComparison/man/cc06-0-Sam-class.Rd
ClassComparison/man/cc06-1-SamSummary-class.Rd
ClassComparison/man/cc07-0-TwoGroupStats-class.Rd
ClassComparison/man/cc08-0-SingleGroup-class.Rd
ClassComparison/man/cc09-0-SmoothTtest-class.Rd
ClassComparison/tests
ClassComparison/tests/testBum.R
ClassComparison/tests/testBum.Rout.save
ClassComparison/tests/testDiff.R
ClassComparison/tests/testDiff.Rout.save
ClassComparison/vignettes
ClassComparison/vignettes/oompa-cc.Rnw