ClassComparison: Classes and Methods for "Class Comparison" Problems on Microarrays

The ClassComparison package defines the classes used for "class comparison" problems in the OOMPA project. Class comparison includes tests for differential expression; see Simon's book for details on typical problem types.

AuthorKevin R. Coombes
Date of publication2016-05-09 20:45:21
MaintainerKevin R. Coombes <krc@silicovore.com>
LicenseApache License (== 2.0)
Version3.1.3
http://oompa.r-forge.r-project.org/

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Files in this package

ClassComparison/DESCRIPTION
ClassComparison/NAMESPACE
ClassComparison/NEWS
ClassComparison/R
ClassComparison/R/cc00-bum.R ClassComparison/R/cc01-ttest.R ClassComparison/R/cc02-EfronTibshirani.R ClassComparison/R/cc03-fastlm.R ClassComparison/R/cc04-Dudoit.R ClassComparison/R/cc05-tnom.R ClassComparison/R/cc06-Sam.R ClassComparison/R/cc07-twoGroupStats.R ClassComparison/R/cc08-singleGroup.R ClassComparison/R/cc09-smoothT.R ClassComparison/R/cc10-pairedT.R
ClassComparison/TODO
ClassComparison/build
ClassComparison/build/vignette.rds
ClassComparison/inst
ClassComparison/inst/doc
ClassComparison/inst/doc/oompa-cc.R
ClassComparison/inst/doc/oompa-cc.Rnw
ClassComparison/inst/doc/oompa-cc.pdf
ClassComparison/inst/samples
ClassComparison/inst/samples/exprSet-example.R
ClassComparison/inst/samples/test00-BUM.R
ClassComparison/inst/samples/test01-ttest.R
ClassComparison/inst/samples/test02-eb.R
ClassComparison/inst/samples/test03-lm.R
ClassComparison/inst/samples/test04-dudoit.R
ClassComparison/inst/samples/test05-tnom.R
ClassComparison/inst/samples/test06-sam.R
ClassComparison/inst/samples/test07-twoGroupStats.R
ClassComparison/inst/samples/test08-singleGroup.R
ClassComparison/inst/samples/test09-smoothT.R
ClassComparison/inst/samples/test10-Tvariant.R
ClassComparison/man
ClassComparison/man/cc00-0-Bum-class.Rd ClassComparison/man/cc00-1-BumSummary-class.Rd ClassComparison/man/cc00-2-significant-method.Rd ClassComparison/man/cc01-0-MultiTtest-class.Rd ClassComparison/man/cc01-1-variantT-class.Rd ClassComparison/man/cc02-0-MultiWilcoxonTest-class.Rd ClassComparison/man/cc02-1-dwil.Rd ClassComparison/man/cc02-2-rankSum.Rd ClassComparison/man/cc03-0-MultiLinearModel-class.Rd ClassComparison/man/cc04-0-Dudoit-class.Rd ClassComparison/man/cc05-0-TNoM-class.Rd ClassComparison/man/cc05-1-TNoMSummary-class.Rd ClassComparison/man/cc06-0-Sam-class.Rd ClassComparison/man/cc06-1-SamSummary-class.Rd ClassComparison/man/cc07-0-TwoGroupStats-class.Rd ClassComparison/man/cc08-0-SingleGroup-class.Rd ClassComparison/man/cc09-0-SmoothTtest-class.Rd
ClassComparison/tests
ClassComparison/tests/testBum.R
ClassComparison/tests/testBum.Rout.save
ClassComparison/tests/testDiff.R
ClassComparison/tests/testDiff.Rout.save
ClassComparison/vignettes
ClassComparison/vignettes/oompa-cc.Rnw

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