CoSeg: An R package for cosegregation analysis and simulating pedigrees

This package contains usefule tools for generating and analyzing pedigrees. Specifically, it contains functions that will generate realistic pedigrees for the USA and China based on historical birth rates and family sizes. It also has functions for analyzing these pedigrees when they include disease information including one based on counting meioses and another based on likelihood ratios.

AuthorJohn Michael O. Ranola and Brian H. Shirts
Date of publication2016-07-19 07:29:39
MaintainerJohn Michael O. Ranola <ranolaj@uw.edu>
LicenseGPL (>= 2)
Version0.2

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Files in this package

CoSeg/DESCRIPTION
CoSeg/NAMESPACE
CoSeg/R
CoSeg/R/CoSeg-internal.R CoSeg/R/add.affected.to.tree.R CoSeg/R/make.affected.trees.R CoSeg/R/make.tree.R CoSeg/R/plot.ped.R CoSeg/R/rank.members.R
CoSeg/build
CoSeg/build/partial.rdb
CoSeg/data
CoSeg/data/BRCA1frequencies.df.rda
CoSeg/data/BRCA2frequencies.df.rda
CoSeg/data/ChinaDemographics.df.rda
CoSeg/data/LSfrequencies.df.rda
CoSeg/data/USDemographics.df.rda
CoSeg/man
CoSeg/man/BRCA1frequencies.df.Rd CoSeg/man/BRCA2frequencies.df.Rd CoSeg/man/ChinaDemographics.df.Rd CoSeg/man/CoSeg-package.Rd CoSeg/man/LSfrequencies.df.Rd CoSeg/man/USDemographics.df.Rd CoSeg/man/add.affected.to.tree.Rd CoSeg/man/calculate.likelihood.ratio.Rd CoSeg/man/make.affected.trees.Rd CoSeg/man/make.tree.Rd CoSeg/man/plot.ped.Rd
CoSeg/src
CoSeg/src/LikelihoodRatio.f90
CoSeg/src/constants.mod
CoSeg/src/rprint.mod

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