DClusterm: Model-Based Detection of Disease Clusters
Version 0.1

Model-based methods for the detection of disease clusters using GLMs, GLMMs and zero-inflated models.

Browse man pages Browse package API and functions Browse package files

AuthorVirgilio Gomez-Rubio, Paula Esther Moraga Serrano, Barry Rowlingson
Date of publication2017-03-02 13:04:30
MaintainerVirgilio Gomez-Rubio <virgilio.gomez@uclm.es>
LicenseGPL-3
Version0.1
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DClusterm", repos="http://R-Forge.R-project.org")

Man pages

brainNM: Brain cancer in New Mexico, USA, 1973-1991.
CalcStatClusterGivenCenter: Calls the function to obtain the cluster with the maximum...
CalcStatsAllClusters: Obtains the clusters with the maximum log-likelihood ratio or...
computeprob: Computes the probability that a model parameter is <=k from...
CreateGridDClusterm: Creates grid over the study area.
DetectClustersModel: Detects clusters and computes their significance.
get.stclusters: Gets areas in a spatio-temporal cluster
glmAndZIP.iscluster: Obtains the cluster with the maximum log-likelihood ratio or...
knbinary: Constructs data frame with clusters in binary format.
mergeknclusters: Merges clusters so that they are identifed as levels of a...
Navarre: Brain cancer in males in Navarre, Spain, 1988-1994.
NY8: Leukemia in an eight-county region of upstate New York,...
PlotClustersNoOverlap: Plots the clusters that do not overlap.
SelectStatsAllClustersNoOverlap: Removes the overlapping clusters.
SetVbleCluster: Constructs a variable that indicates the locations and times...
slimknclusters: Remove overlapping clusters

Functions

CalcStatClusterGivenCenter Man page Source code
CalcStatsAllClusters Man page Source code
CreateGridDClusterm Man page Source code
DetectClustersModel Man page Source code
NY8 Man page
Navarre Man page
PlotClustersNoOverlap Man page Source code
SelectStatsAllClustersNoOverlap Man page Source code
SetVbleCluster Man page Source code
TCE Man page
brainNM Man page
brainnav Man page
brainnavnb Man page
brainst Man page
computeprob Man page Source code
get.stclusters Man page Source code
glmAndZIP.iscluster Man page Source code
knbinary Man page Source code
losalamos Man page
mergeknclusters Man page Source code
slimknclusters Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/Functions1.R
R/Functions2.R
R/glm.iscluster.R
R/knutils.R
build
build/vignette.rds
data
data/NY8.RData
data/Navarre.RData
data/brainNM.RData
inst
inst/doc
inst/doc/DClusterm.R
inst/doc/DClusterm.Rnw
inst/doc/DClusterm.pdf
inst/samples
inst/samples/ExamplePAU.R
man
man/CalcStatClusterGivenCenter.Rd
man/CalcStatsAllClusters.Rd
man/CreateGridDClusterm.Rd
man/DetectClustersModel.Rd
man/NY8.Rd
man/Navarre.Rd
man/PlotClustersNoOverlap.Rd
man/SelectStatsAllClustersNoOverlap.Rd
man/SetVbleCluster.Rd
man/brainNM.Rd
man/computeprob.Rd
man/get.stclusters.Rd
man/glmAndZIP.iscluster.Rd
man/knbinary.Rd
man/mergeknclusters.Rd
man/slimknclusters.Rd
vignettes
vignettes/DClusterm-006.pdf
vignettes/DClusterm-017.pdf
vignettes/DClusterm-028.pdf
vignettes/DClusterm-030.pdf
vignettes/DClusterm-038.pdf
vignettes/DClusterm-041.pdf
vignettes/DClusterm-052.pdf
vignettes/DClusterm.Rnw
vignettes/DClusterm.bib
vignettes/Makefile
vignettes/jsslogo.jpg
DClusterm documentation built on May 21, 2017, 4:08 a.m.