DynTxRegime: Methods for Estimating Dynamic Treatment Regimes
Version 2.1

A comprehensive toolkit for estimating Dynamic Treatment Regimes. Available methods include Interactive Q-Learning, Q-Learning, and value-search methods based on Augmented Inverse Probability Weighted estimators and Inverse Probability Weighted estimators.

Browse man pages Browse package API and functions Browse package files

AuthorS. T. Holloway, E. B. Laber, K. A. Linn, B. Zhang, M. Davidian, and A. A. Tsiatis
Date of publication2015-06-16 17:23:22
MaintainerShannon T. Holloway <sthollow@ncsu.edu>
LicenseGPL-2
Version2.1
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DynTxRegime", repos="http://R-Forge.R-project.org")

Man pages

bmiData: Adolescent BMI dataset (generated toy example)
buildModelObjSubset: Create Model Objects for Subsets of Data.
class-DynTxRegime: Class '"DynTxRegime"'
DynTxRegime-internal-api: ~~
DynTxRegime-package: Methods for Estimating Dynamic Treatment Regimes
iqLearnFS: IQ-Learning: First-Stage Regression of Estimated Second-Stage...
iqLearnFSC: IQ-Learning: First-Stage Regression of Second-Stage Estimated...
iqLearnSS: IQ-Learning: Second-Stage Regression
iqLearnVar: IQ-Learning: Variance of First-Stage Regression of...
methods-classif: Retrieve Classification Value Object
methods-coef: Extract Model Coefficients
methods-estimator: Mean Predicted Outcome
methods-fitObject: Modeling Function Value Objects
methods-fittedCont: Extract Fitted Contrast Functions
methods-fittedMain: Extract Fitted Main Effects
methods-genetic: Retrieve the Result of the Genetic Algorithm Optimization
methods-optTx: Methods to Retrieve Estimated or to Predict Optimal Treatment
methods-outcome: Retrieve Regression Objects for the Outcome Regression Models
methods-plot: Generate Standard Plots
methods-propen: Retrieve Regression Objects for Propensity for Treatment
methods-qqPlot: IQ-Learning: Generate QQ-Plots for Variance Modeling .
methods-Qstep: Step of an DynTxRegime method
methods-regimeCoef: Retrieve Regime Parameter Estimates
methods-residuals: Extract Model Residuals
methods-show: Show an Object
methods-stdDev: Standard Deviation of IQ-Learning Variance Step
methods-summary: Summary Results
methods-ValueFuncs: Q-functions for All Treatment Options
optimalClass: Classification Based Robust Estimation of Optimal Dynamic...
optimalSeq: Regression Based Value-Search Estimation of Optimal Dynamic...
plugInValue: Estimate Plug-in Value
qLearn: Q-learning

Functions

CycleThruDP Source code
CycleThruTx Source code
DTRstep Man page
DTRstep,DynTxRegime-method Man page
DeveloperError Source code
DynTxRegime Man page
DynTxRegime-class Man page
DynTxRegime-package Man page
LocalPredictFunction Source code
LocalResidualsFunction Source code
UserError Source code
[[,List-method Man page
[[<-,List-method Man page
[[<-,QLearnEstList-method Man page
bmiData Man page
buildModelObjSubset Man page Source code
classif Man page
classif,DynTxRegime-method Man page
coef Man page
coef,DynTxRegime-method Man page
eliminateSingleTx Source code
estimator Man page
estimator,DynTxRegime-method Man page
feasibility Source code
fitChoose Source code
fitCombined Source code
fitIterate Source code
fitObject Man page
fitObject,DynTxRegime-method Man page
fitPropen Source code
fittedCont Man page
fittedCont,DynTxRegime-method Man page
fittedMain Man page
fittedMain,DynTxRegime-method Man page
genetic Man page
genetic,DynTxRegime-method Man page
iqEst Source code
iqLearnFSC Man page Source code
iqLearnFSM Man page Source code
iqLearnFSV Man page Source code
iqLearnSS Man page Source code
iqLearnVarHet Source code
iqLearnVarHom Source code
iqLearn_optTx1 Source code
iqLearn_pm Source code
length,List-method Man page
optTx Man page
optTx,DynTxRegime,data.frame-method Man page
optTx,DynTxRegime,missing-method Man page
optimalClass Man page Source code
optimalClass_AIPWE Source code
optimalClass_IPWE Source code
optimalClass_classification Source code
optimalCore Source code
optimalSeq Man page Source code
optimalSeq_AIPWE Source code
optimalSeq_IPWE Source code
outcome Man page
outcome,DynTxRegime-method Man page
pickOutcomeModels Source code
pickPropenModels Source code
plot Man page
plot,DynTxRegime-method Man page
plugInValue Man page Source code
propen Man page
propen,DynTxRegime-method Man page
qFuncs Man page
qFuncs,DynTxRegime-method Man page
qFuncs,IQEst-method Man page
qFuncs,IQLearnFS_VHom-method Man page
qFuncs,OptimalClass-method Man page
qFuncs,OptimalSeq-method Man page
qFuncs,QLearnEst-method Man page
qLearn Man page Source code
qLearnEst Source code
qLearn_optTx_testSet Source code
qqPlot Man page
qqPlot,DynTxRegime-method Man page
qqPlot,IQLearnFS_VHet-method Man page
regimeCoef Man page
regimeCoef,DynTxRegime-method Man page
residuals Man page
residuals,DynTxRegime-method Man page
show Man page
show,DynTxRegime-method Man page
show-methods Man page
stdDev Man page
stdDev,DynTxRegime-method Man page
summary Man page
summary,DynTxRegime-method Man page
summary-methods Man page
txProcess Source code
verifyTxvec Source code

Files

DESCRIPTION
NAMESPACE
R
R/1Generics.R
R/A01Classes.R
R/A02Classes_TxInfo.R
R/A03Classes_ModelObjSubset.R
R/A04Classes_SimpleFit.R
R/A05Classes_IterateFit.R
R/A06Classes_IQLearn.R
R/A07Classes_SubsetFit.R
R/A08Classes_QLearn.R
R/A09Classes_OtherFits.R
R/A10Classes_OptimalSeq.R
R/A11Classes_OptimalClass.R
R/eliminateSingleTx.R
R/errors.R
R/fitCombined.R
R/fitIterate.R
R/fitPropen.R
R/fitUtilities.R
R/iqEst.R
R/iqLearnFSC.R
R/iqLearnFSM.R
R/iqLearnSS.R
R/iqLearnVar.R
R/iqLearn_optTx1.R
R/iqLearn_pm.R
R/methods-DynTxRegime.R
R/methods-qFuncs.R
R/modelObjSubset.R
R/optimalClass.R
R/optimalClass_AIPWE.R
R/optimalClass_IPWE.R
R/optimalClass_classification.R
R/optimalCore.R
R/optimalSeq.R
R/optimalSeq_AIPWE.R
R/optimalSeq_IPWE.R
R/plugInValue.R
R/qLearn.R
R/qLearnEst.R
R/qLearn_optTx_testSet.R
R/txUtilities.R
data
data/bmiData.RData
man
man/DynTxRegime-internal-api.Rd
man/DynTxRegime-package.Rd
man/bmiData.Rd
man/buildModelObjSubset.Rd
man/class-DynTxRegime.Rd
man/iqLearnFS.Rd
man/iqLearnFSC.Rd
man/iqLearnSS.Rd
man/iqLearnVar.Rd
man/methods-Qstep.Rd
man/methods-ValueFuncs.Rd
man/methods-classif.Rd
man/methods-coef.Rd
man/methods-estimator.Rd
man/methods-fitObject.Rd
man/methods-fittedCont.Rd
man/methods-fittedMain.Rd
man/methods-genetic.Rd
man/methods-optTx.Rd
man/methods-outcome.Rd
man/methods-plot.Rd
man/methods-propen.Rd
man/methods-qqPlot.Rd
man/methods-regimeCoef.Rd
man/methods-residuals.Rd
man/methods-show.Rd
man/methods-stdDev.Rd
man/methods-summary.Rd
man/optimalClass.Rd
man/optimalSeq.Rd
man/plugInValue.Rd
man/qLearn.Rd
DynTxRegime documentation built on May 21, 2017, 1:17 a.m.