| AIC | Akaike information criterion (AIC) method |
| apply | Method apply |
| Arith | Arithmetic methods for FLQuant objects |
| as.data.frame | Method as.data.frame |
| asOld | Old S3 coercion methods |
| BIC | Bayesian information criterion (BIC) method |
| bkey | Generate key for bubbles plot |
| bubbles | Bubbles plot |
| catchNames | Method catchNames |
| ccplot | Catch-curves plot |
| coerce | Method coerce |
| computeCatch | Methods to compute total catch, landings, discards and stock... |
| createFLAccesors | Create accesor methods for a given class |
| cv | Coefficient of Variation of FLR objects with multiple... |
| data | FLCore datasets |
| dimnames | Modify dimnames of an FLQuant |
| dims | List with information on object dimensions |
| expand | Trim FLR objects using named dimensions |
| Extract | Extract or Replace Parts of an FLR Object |
| fbar | Calculates mean harvest rate or fishing mortality |
| FLArray-class | Class FLArray |
| FLBiol-class | Class FLBiol |
| FLBiols-class | Class FLBiols |
| flc2flq | Coerce FLCohort into FLQuant. |
| FLCatch-accessors | Accesor and replacement methods for the FLCatch class |
| FLCatch-class | Class FLCatch |
| FLCatches-class | Class FLCatches |
| FLCohort-class | Class FLCohort |
| FLCohorts-class | Class FLCohorts |
| FLComp-class | Class FLComp |
| FLCore-accesors | Accesor and replacement methods for complex S4 classes |
| FLCore-internal | FLCore-internal |
| FLCore-package | Core package of FLR, fisheries modelling in R. |
| FLFleet-class | Class FLFleet |
| FLFleets-class | Class FLFleets |
| FLIndex-class | Class FLIndex |
| FLIndices-class | Class FLIndices |
| FLlst-class | Class FLlst |
| FLMetier-class | Class FLMetier |
| FLMetiers-class | Class FLMetiers |
| FLModel-class | Class FLModel for statistical models |
| FLPar-class | Class FLPar |
| FLQuant-class | FLQuant class for numerical data |
| FLQuantPoint-accesors | Method lowq |
| FLQuantPoint-class | Class FLQuantPoint |
| FLQuants-class | Class FLQuants |
| FLQuantSums | Methods to compute sums, means and vars of FLQuant objects |
| FLQuantTotals | Method quantTotals |
| FLSR-class | Class FLSR |
| FLStock-class | Class FLStock |
| FLStocks-class | Class FLStocks |
| FLtest | FLtest functions for running simple units tests |
| fmle | Method fmle |
| harvest | Harvest calculations for FLBiol |
| IOfunctions | Input/Output of FLR objects |
| is.FL | Methods to determine the class of a given object |
| iter | Select or modify iterations of an FLR object |
| iters | Method iters |
| jacknife | Jacknife resampling |
| lapply | Method lapply |
| lattice | Lattice plots |
| leslie | Method for calculating Leslie matrix dynamics of an FLBiol... |
| limits | Methods upper and lower |
| lowess | Method lowess |
| mcf | Method mcf |
| mean | Method mean |
| mean.lifespan | Method for calculating mean lifespan, given the natural... |
| median | Method median |
| mergeFL | Merging FLStock objects |
| metier | Method metier |
| model.frame | Method model.frame |
| names | Method names |
| nls | Method nls |
| plot | Method plot |
| predict | Method predict |
| Method print | |
| propagate | Extend an FLQuant along the iter dimension |
| pv | Population variability |
| qapply | Method qapply |
| quant | Method quant |
| quantile | Method quantile |
| r | Intrinsic rate of increase from an FLBiol object |
| range | Method range |
| revenue | Method revenue |
| rgamma | Method rgamma |
| rlnorm | Method rlnorm |
| rnorm | Method rnorm |
| rpois | Method rpois |
| sd | Standard deviation of an FLModel object |
| setPlusGroup | Method setPlusGroup |
| show | Method show |
| sop | Calculates the sum of products correction |
| splom | Method splom |
| spr0 | Method spr0 |
| sr | Stock-recruitment model function |
| SRModelName | Convenience function to identify an SR model by its formula |
| SRModels | Stock-Recruitment models |
| ssb | Method ssb |
| ssbpurec | Method ssbpurec |
| ssn | Method ssn |
| summary | Method summary |
| survprob | Calculating survival probabilties given mortality in the... |
| sweep | Sweep out FLQuant Summaries |
| transform | Transform elements of a complex FLR object |
| trim | Trim FLR objects using named dimensions |
| units | units attribute for FLQuant objects |
| update | Method update |
| var | Variance of an FLPar |
| window | Extract time (year) windows of an FLR object |
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