Files in GWAtoolbox

GWAS Quality Control

COPYING

DESCRIPTION

NAMESPACE

inst/doc/workflow.png

inst/doc/genes_HGNC_ensembl_rel54_may2009_b36.txt

inst/doc/gwa_data_example_2.tbl

inst/doc/gwa_data_example_1.txt

inst/doc/PANNOTATE_script.txt

inst/doc/GWAtoolbox.Rnw

inst/doc/genes_HGNC_ensembl_rel67_may2012_b37.txt

inst/doc/GWAtoolbox.pdf

inst/doc/gwa_data_example_3.csv

inst/doc/map_b37.txt

inst/doc/plots.png

inst/doc/PGWASFORMAT_script.txt

inst/doc/kusk_check.png

inst/doc/PGWASQC_script.txt

inst/doc/GWASFORMAT_script.txt

inst/doc/gwa_data_example_4.txt

inst/doc/ANNOTATE_script.txt

inst/doc/dispersion.png

inst/doc/gwa_data_example_5.csv

inst/doc/GWASQC_script.txt

inst/extdata/menu_style.css

inst/extdata/content_style.css

inst/extdata/script.js

R/INDEPENDENT_SNPS.R R/PLOT_COMBINED_BOXPLOTS.R R/PLOT.R R/ANNOTATE.R R/GWASFORMAT.R R/PGWASFORMAT.R R/HARMONIZE_BY_POS.R R/KUSK_CHECK.R R/RE.R R/HARMONIZE.R R/GWASQC.R R/DISPERSION_CHECK.R R/PGWASQC.R R/PANNOTATE.R

src/Makevars.win

src/Makevars

src/GWAtoolbox.h

src/GWAtoolbox.cpp

src/gwasformat/include/columns/EffectiveSampleSizeColumn.h

src/gwasformat/include/columns/Column.h

src/gwasformat/include/columns/CorrectedStandardErrorColumn.h

src/gwasformat/include/columns/ColumnException.h

src/gwasformat/include/columns/CorrectedPvalueColumn.h

src/gwasformat/include/formatter/FormatterException.h

src/gwasformat/include/formatter/Formatter.h

src/gwasformat/libs/columns/ColumnException.cpp

src/gwasformat/libs/columns/Makefile

src/gwasformat/libs/columns/EffectiveSampleSizeColumn.cpp

src/gwasformat/libs/columns/CorrectedStandardErrorColumn.cpp

src/gwasformat/libs/columns/CorrectedPvalueColumn.cpp

src/gwasformat/libs/columns/Column.cpp

src/gwasformat/libs/formatter/Makefile

src/gwasformat/libs/formatter/FormatterException.cpp

src/gwasformat/libs/formatter/Formatter.cpp

src/independization/Makefile

src/independization/Selector.cpp

src/independization/SelectorException.cpp

src/independization/include/Selector.h

src/independization/include/SelectorException.h

src/annotation/Makefile

src/annotation/Annotator.cpp

src/annotation/AnnotatorException.cpp

src/annotation/include/Annotator.h

src/annotation/include/AnnotatorException.h

src/randomeffect/Makefile

src/randomeffect/SamplerException.cpp

src/randomeffect/Sampler.cpp

src/randomeffect/include/Sampler.h

src/randomeffect/include/SamplerException.h

src/zlib/deflate.c

src/zlib/inflate.h

src/zlib/zutil.c

src/zlib/zutil.h

src/zlib/gzlib.c

src/zlib/gzwrite.c

src/zlib/inflate.c

src/zlib/Makefile

src/zlib/crc32.c

src/zlib/inftrees.c

src/zlib/deflate.h

src/zlib/zlib.h

src/zlib/zconf.h

src/zlib/adler32.c

src/zlib/uncompr.c

src/zlib/gzread.c

src/zlib/compress.c

src/zlib/gzguts.h

src/zlib/gzclose.c

src/zlib/crc32.h

src/zlib/trees.h

src/zlib/trees.c

src/zlib/inffast.h

src/zlib/inftrees.h

src/zlib/infback.c

src/zlib/inffast.c

src/zlib/inffixed.h

src/auxiliary/Makefile

src/auxiliary/auxiliary.cpp

src/auxiliary/include/auxiliary.h

src/reader/ReaderException.cpp

src/reader/Makefile

src/reader/ReaderFactory.cpp

src/reader/TextReader.cpp

src/reader/Reader.cpp

src/reader/GzipReader.cpp

src/reader/include/ReaderException.h

src/reader/include/Reader.h

src/reader/include/ReaderFactory.h

src/reader/include/TextReader.h

src/reader/include/GzipReader.h

src/intervaltree/IntervalTree.cpp

src/intervaltree/Makefile

src/intervaltree/Interval.cpp

src/intervaltree/include/IntervalTree.h

src/intervaltree/include/Interval.h

src/harmonization/Harmonizer2Log.cpp

src/harmonization/Makefile

src/harmonization/Harmonizer.cpp

src/harmonization/Harmonizer2Exception.cpp

src/harmonization/HarmonizerException.cpp

src/harmonization/Harmonizer2.cpp

src/harmonization/include/HarmonizerException.h

src/harmonization/include/Harmonizer2Exception.h

src/harmonization/include/Harmonizer2Log.h

src/harmonization/include/Harmonizer.h

src/harmonization/include/Harmonizer2.h

src/descriptor/Descriptor.cpp

src/descriptor/Makefile

src/descriptor/DescriptorException.cpp

src/descriptor/include/DescriptorException.h

src/descriptor/include/Descriptor.h

src/gwasqc/include/metas/MetaException.h

src/gwasqc/include/metas/MetaImplausibleStrict.h

src/gwasqc/include/metas/MetaNumeric.h

src/gwasqc/include/metas/MetaImplausibleStrictAdjusted.h

src/gwasqc/include/metas/Meta.h

src/gwasqc/include/metas/MetaUniqueness.h

src/gwasqc/include/metas/MetaFormat.h

src/gwasqc/include/metas/MetaRatio.h

src/gwasqc/include/metas/MetaImplausible.h

src/gwasqc/include/metas/MetaGroup.h

src/gwasqc/include/metas/MetaCrossTable.h

src/gwasqc/include/metas/MetaFiltered.h

src/gwasqc/include/plots/Plottable.h

src/gwasqc/include/plots/Qqplot.h

src/gwasqc/include/plots/PlotException.h

src/gwasqc/include/plots/Plot.h

src/gwasqc/include/plots/Histogram.h

src/gwasqc/include/plots/Boxplot.h

src/gwasqc/include/expressions/Gt.h

src/gwasqc/include/expressions/Lt.h

src/gwasqc/include/expressions/Disjunction.h

src/gwasqc/include/expressions/Conjunction.h

src/gwasqc/include/expressions/Evaluable.h

src/gwasqc/include/expressions/Get.h

src/gwasqc/include/expressions/Let.h

src/gwasqc/include/analyzer/Analyzer.h

src/gwasqc/include/analyzer/AnalyzerException.h

src/gwasqc/libs/metas/Makefile

src/gwasqc/libs/metas/MetaRatio.cpp

src/gwasqc/libs/metas/MetaNumeric.cpp

src/gwasqc/libs/metas/MetaException.cpp

src/gwasqc/libs/metas/Meta.cpp

src/gwasqc/libs/metas/MetaCrossTable.cpp

src/gwasqc/libs/metas/MetaUniqueness.cpp

src/gwasqc/libs/metas/MetaGroup.cpp

src/gwasqc/libs/metas/MetaImplausibleStrictAdjusted.cpp

src/gwasqc/libs/metas/MetaImplausible.cpp

src/gwasqc/libs/metas/MetaImplausibleStrict.cpp

src/gwasqc/libs/metas/MetaFormat.cpp

src/gwasqc/libs/metas/MetaFiltered.cpp

src/gwasqc/libs/plots/Boxplot.cpp

src/gwasqc/libs/plots/Makefile

src/gwasqc/libs/plots/Plot.cpp

src/gwasqc/libs/plots/Histogram.cpp

src/gwasqc/libs/plots/PlotException.cpp

src/gwasqc/libs/plots/Qqplot.cpp

src/gwasqc/libs/expressions/Disjunction.cpp

src/gwasqc/libs/expressions/Gt.cpp

src/gwasqc/libs/expressions/Makefile

src/gwasqc/libs/expressions/Evaluable.cpp

src/gwasqc/libs/expressions/Let.cpp

src/gwasqc/libs/expressions/Conjunction.cpp

src/gwasqc/libs/expressions/Get.cpp

src/gwasqc/libs/expressions/Lt.cpp

src/gwasqc/libs/analyzer/Makefile

src/gwasqc/libs/analyzer/Analyzer.cpp

src/gwasqc/libs/analyzer/AnalyzerException.cpp

src/exception/Makefile

src/exception/Exception.cpp

src/exception/include/Exception.h

src/bitarray/Makefile

src/bitarray/BitArrayException.cpp

src/bitarray/BitArray.cpp

src/bitarray/include/BitArrayException.h

src/bitarray/include/BitArray.h

src/writer/Makefile

src/writer/Writer.cpp

src/writer/TextWriter.cpp

src/writer/GzipWriter.cpp

src/writer/WriterFactory.cpp

src/writer/WriterException.cpp

src/writer/include/WriterFactory.h

src/writer/include/GzipWriter.h

src/writer/include/TextWriter.h

src/writer/include/WriterException.h

src/writer/include/Writer.h

src/gwafile/Makefile

src/gwafile/GwaFileException.cpp

src/gwafile/GwaFile.cpp

src/gwafile/include/GwaFileException.h

src/gwafile/include/GwaFile.h

man/harmonize_by_pos.Rd man/annotate.Rd man/gwasqc.Rd man/harmonize.Rd man/independent_snps.Rd man/pannotate.Rd man/pgwasqc.Rd man/re.Rd man/pgwasformat.Rd man/kusk_check.Rd man/dispersion_check.Rd man/gwasformat.Rd

GWAtoolbox documentation built on May 2, 2019, 4:54 p.m.