HCgglasso: Group-Lasso with Hierarchical Clustering

Group-lasso with hierarchical clustering.

Author
Quentin Grimonprez
Date of publication
2016-09-09 09:14:18
Maintainer
Quentin Grimonprez <quentin.grimonprez@inria.fr>
License
GPL (>=2)
Version
0.2.5

View on R-Forge

Man pages

coef.cv.HCgglasso
Get coefficients from a 'cv.HCgglasso' object
coef.HCgglasso
Get coefficients from a 'HCgglasso' object
cv.HCgglasso
cv.HCgglasso
Ftest
F-test
fullProcess
Full process of HCgglasso
HCgglasso
Run hierarchical clustering following by a group-lasso on all...
HCgglasso-package
HCgglasso
hierarchicalFDR
Hierachical testing with FDR control
hierarchicalFWER
Hierachical testing with FWER control
listToMatrix
Obtain a sparse matrix of the coefficients of the path
overlapgglasso
Group-lasso with overlapping groups
partialFtest
Partial F-test
plot.cv.HCgglasso
Plot the cross-validation obtained from 'cv.HCgglasso'...
plot.HCgglasso
Plot the path obtained from 'HCgglasso' function
plot.stability.HCgglasso
Plot the stability path obtained from 'stability.HCgglasso'...
predict.cv.HCgglasso
Predict fitted values from a 'cv.HCgglasso' object
predict.HCgglasso
Predict fitted values from a 'HCgglasso' object
selFDR
Selection from hierarchical testing with FDR control
selFWER
Selection from hierarchical testing with FWER control
simuBlockGaussian
Simulate multivariate Gaussian samples with block diagonal...
stability.HCgglasso
Stability Selection
uniqueGroupHclust
Find all unique groups in 'hclust' results

Files in this package

HCgglasso/DESCRIPTION
HCgglasso/NAMESPACE
HCgglasso/NEWS
HCgglasso/R
HCgglasso/R/HCgglasso-package.R
HCgglasso/R/HCgglasso.R
HCgglasso/R/cv.HCgglasso.R
HCgglasso/R/fullProcess.R
HCgglasso/R/hierarchicalFDR.R
HCgglasso/R/hierarchicalFWER.R
HCgglasso/R/hierarchicalTestClassical.R
HCgglasso/R/overlap.R
HCgglasso/R/predict.R
HCgglasso/R/simuBlockGaussian.R
HCgglasso/R/stability.R
HCgglasso/R/testFunction.R
HCgglasso/R/treeFunction.R
HCgglasso/R/uniqueGroupHclust.R
HCgglasso/R/utilities.R
HCgglasso/TODO
HCgglasso/man
HCgglasso/man/Ftest.Rd
HCgglasso/man/HCgglasso-package.Rd
HCgglasso/man/HCgglasso.Rd
HCgglasso/man/coef.HCgglasso.Rd
HCgglasso/man/coef.cv.HCgglasso.Rd
HCgglasso/man/cv.HCgglasso.Rd
HCgglasso/man/fullProcess.Rd
HCgglasso/man/hierarchicalFDR.Rd
HCgglasso/man/hierarchicalFWER.Rd
HCgglasso/man/listToMatrix.Rd
HCgglasso/man/overlapgglasso.Rd
HCgglasso/man/partialFtest.Rd
HCgglasso/man/plot.HCgglasso.Rd
HCgglasso/man/plot.cv.HCgglasso.Rd
HCgglasso/man/plot.stability.HCgglasso.Rd
HCgglasso/man/predict.HCgglasso.Rd
HCgglasso/man/predict.cv.HCgglasso.Rd
HCgglasso/man/selFDR.Rd
HCgglasso/man/selFWER.Rd
HCgglasso/man/simuBlockGaussian.Rd
HCgglasso/man/stability.HCgglasso.Rd
HCgglasso/man/uniqueGroupHclust.Rd