selFWER: Selection from hierarchical testing with FWER control

Description Usage Arguments Details Value References See Also Examples

View source: R/hierarchicalFWER.R

Description

Select groups from hierarchical testing procedure with FWER control (hierarchicalFWER)

Usage

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selFWER(out, alpha = 0.05)

Arguments

out

output of hierarchicalFDR function

alpha

control level for test

Details

Only outer nodes (rejected groups without rejected children) are returned as TRUE.

Value

a list containing :

toSel

vector of boolean. TRUE if the group is selected

groupId

Names of groups

References

Meinshausen, Nicolai. "Hierarchical Testing of Variable Importance." Biometrika 95.2 (2008): 265-78.

See Also

hierarchicalFWER

Examples

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set.seed(42)
X = simuBlockGaussian(50,12,5,0.7)
y = drop(X[,c(2,7,12)]%*%c(2,2,-2)+rnorm(50,0,0.5))
res = HCgglasso(X,y)
test = hierarchicalFWER(X, y, res$group[[20]], res$var[[20]])
sel = selFWER (test, alpha = 0.05)

HCgglasso documentation built on May 2, 2019, 4:54 p.m.