HITXML: Planning tools for ion beam therapy

Code to create simple XML-based irradiation plans and forward-calculate plans or beam records. The functionality is consider to be used withs sscript distributed with this package (in /exec). The package is tailored to use with the scanning ion beam at the Heidelberg Ion-beam Therapy center (HIT) but might be useful for generic application as well.

AuthorSteffen Greilich, Sarah Stefanowicz, Grischa Klimpki, Tina Pfeiler, Eduardo Yukihara and others
Date of publication2016-11-07 14:28:19
MaintainerSteffen Greilich <s.greilich@dkfz.de>
LicenseGPL (>=3)
Version0.9.8

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Files

DESCRIPTION
NAMESPACE
R
R/HX.RBE.LEM.R R/HX.compute.field.R R/HX.construct.field.R R/HX.construct.field.circle.R R/HX.construct.field.shells.R R/HX.construct.field.square.R R/HX.correct.user.input.R R/HX.cost.function.R R/HX.custom.menu.R R/HX.get.BP.depth.R R/HX.get.available.energies.R R/HX.get.user.input.IES.R R/HX.get.user.input.basic.R R/HX.getMinAndMax.R R/HX.optimize.field.R R/HX.prompt.user.R R/HX.read.PBR.R R/HX.read.defaults.R R/HX.routines.R R/HX.save.defaults.R R/clan.create.latex.table.R R/clan.leading.blanks.R R/clan.txtplot.R R/dataDDD.R R/dataDDDset.R R/dataRBE.R R/dataSIS.R R/dataSPC.R R/dataSPCset.R R/dataSpectrum.R R/get.multivariat.weighted.histogram.R R/plot.SOBP.R R/read.FLUKA.phase.space.R R/read.item.character.R R/read.item.numeric.R R/zzz.R
README
exec
exec/Extract.Spectra.HITXML.R exec/HIT_XML.Create_Plan.R exec/HIT_XML.Create_Plan_from_SOBP.R exec/HIT_XML.Create_SOBP.R exec/HIT_XML.Forward_Compute_PBR.R exec/HIT_XML.Forward_Compute_SOBP.R
exec/HIT_XML.defaults
exec/HIT_XML.defaults.DEFAULT
inst
inst/extdata
inst/extdata/FLUKA
inst/extdata/FLUKA/sg73000_SOBP_spectra
inst/extdata/FLUKA/sg73000_SOBP_spectra/README.txt
inst/extdata/FLUKA/sg73000_SOBP_spectra/SOBP_sg73000.dat
inst/extdata/FLUKA/sg73000_SOBP_spectra/mgdraw_sg73000.f
inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73000.flair
inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73000.inp
inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73000_GrischaPhaseSpace_SOBP.R
inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73001.flair
inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73001.inp
inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73001_GrischaPhaseSpace_RisingFlank.R
inst/extdata/FLUKA/sg73000_SOBP_spectra/source_sg73000.f
inst/extdata/FLUKA/sg74000_SPC
inst/extdata/FLUKA/sg74000_SPC/12C_generic_270_3MM.Rda
inst/extdata/FLUKA/sg74000_SPC/README.txt
inst/extdata/FLUKA/sg74000_SPC/mgdraw_sg74000.f
inst/extdata/FLUKA/sg74000_SPC/sg74000_GeneralSPC_template.flair
inst/extdata/FLUKA/sg74000_SPC/sg74000_GeneralSPC_template.inp
inst/extdata/FLUKA/sg74000_SPC/sg74000_GeneralSPCs.R
inst/extdata/FLUKA/sg74001_DEDX
inst/extdata/FLUKA/sg74001_DEDX/README.txt
inst/extdata/FLUKA/sg74001_DEDX/dEdX_FLUKA_WATER.Rda
inst/extdata/FLUKA/sg74001_DEDX/mgdraw_sg74001.f
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX.R
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-1001_dEdx
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-2001_dEdx
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-3001_dEdx
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-4001_dEdx
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-5001_dEdx
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-6001_dEdx
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template.flair
inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template.inp
inst/extdata/SOBP_sg73002.dat
man
man/HITXML-package.Rd man/HT.cost.function.Rd man/HT.optimize.field.Rd man/HX.compute.field.Rd man/Mass.Stopping.Power.MeV.cm2.g.Rd man/beam.spot.grid.Rd man/dataSIS-class.Rd man/dataSPC.Rd man/dataSpectrum-class.Rd man/dataSpectrum.Rd man/dose.Gy.Rd man/get.multivariate.weighted.histogram.Rd man/plot-dataSpectrum-method.Rd man/read.FLUKA.phase.space.Rd man/spectrum.Rd man/spectrum.at.depth.g.cm2.Rd man/total.n.particles.Rd
src
src/HITXML.cpp

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