HITXML: Planning tools for ion beam therapy

Share:

Code to create simple XML-based irradiation plans and forward-calculate plans or beam records. The functionality is consider to be used withs sscript distributed with this package (in /exec). The package is tailored to use with the scanning ion beam at the Heidelberg Ion-beam Therapy center (HIT) but might be useful for generic application as well.

Author
Steffen Greilich, Sarah Stefanowicz, Grischa Klimpki, Tina Pfeiler, Eduardo Yukihara and others
Date of publication
2016-11-07 14:28:19
Maintainer
Steffen Greilich <s.greilich@dkfz.de>
License
GPL (>=3)
Version
0.9.8

View on R-Forge

Man pages

beam.spot.grid
beam.spot.grid
dataSIS-class
dataSIS structure
dataSPC
Class for SPC
dataSpectrum
Constructor for 'dataSpectrum' class
dataSpectrum-class
Class for particle spectra
dose.Gy
Dose for a spectrum
get.multivariate.weighted.histogram
Multivariate histogram from weighted variable
HITXML-package
Package to create XML plans for HIT.
HT.cost.function
HX.cost.function
HT.optimize.field
HX.optimize.field
HX.compute.field
HX.compute.field
Mass.Stopping.Power.MeV.cm2.g
Mass stopping power for all energy bins in a spectrum
plot-dataSpectrum-method
Method plot
read.FLUKA.phase.space
Import of phase space files scored with FLUKA
spectrum
Create empty spectrum
spectrum.at.depth.g.cm2
R function for interpolation of spc files with depth, was in...
total.n.particles
Total number of particles in a spectrum

Files in this package

HITXML/DESCRIPTION
HITXML/NAMESPACE
HITXML/R
HITXML/R/HX.RBE.LEM.R
HITXML/R/HX.compute.field.R
HITXML/R/HX.construct.field.R
HITXML/R/HX.construct.field.circle.R
HITXML/R/HX.construct.field.shells.R
HITXML/R/HX.construct.field.square.R
HITXML/R/HX.correct.user.input.R
HITXML/R/HX.cost.function.R
HITXML/R/HX.custom.menu.R
HITXML/R/HX.get.BP.depth.R
HITXML/R/HX.get.available.energies.R
HITXML/R/HX.get.user.input.IES.R
HITXML/R/HX.get.user.input.basic.R
HITXML/R/HX.getMinAndMax.R
HITXML/R/HX.optimize.field.R
HITXML/R/HX.prompt.user.R
HITXML/R/HX.read.PBR.R
HITXML/R/HX.read.defaults.R
HITXML/R/HX.routines.R
HITXML/R/HX.save.defaults.R
HITXML/R/clan.create.latex.table.R
HITXML/R/clan.leading.blanks.R
HITXML/R/clan.txtplot.R
HITXML/R/dataDDD.R
HITXML/R/dataDDDset.R
HITXML/R/dataRBE.R
HITXML/R/dataSIS.R
HITXML/R/dataSPC.R
HITXML/R/dataSPCset.R
HITXML/R/dataSpectrum.R
HITXML/R/get.multivariat.weighted.histogram.R
HITXML/R/plot.SOBP.R
HITXML/R/read.FLUKA.phase.space.R
HITXML/R/read.item.character.R
HITXML/R/read.item.numeric.R
HITXML/R/zzz.R
HITXML/README
HITXML/exec
HITXML/exec/Extract.Spectra.HITXML.R
HITXML/exec/HIT_XML.Create_Plan.R
HITXML/exec/HIT_XML.Create_Plan_from_SOBP.R
HITXML/exec/HIT_XML.Create_SOBP.R
HITXML/exec/HIT_XML.Forward_Compute_PBR.R
HITXML/exec/HIT_XML.Forward_Compute_SOBP.R
HITXML/exec/HIT_XML.defaults
HITXML/exec/HIT_XML.defaults.DEFAULT
HITXML/inst
HITXML/inst/extdata
HITXML/inst/extdata/FLUKA
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/README.txt
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/SOBP_sg73000.dat
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/mgdraw_sg73000.f
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73000.flair
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73000.inp
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73000_GrischaPhaseSpace_SOBP.R
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73001.flair
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73001.inp
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/sg73001_GrischaPhaseSpace_RisingFlank.R
HITXML/inst/extdata/FLUKA/sg73000_SOBP_spectra/source_sg73000.f
HITXML/inst/extdata/FLUKA/sg74000_SPC
HITXML/inst/extdata/FLUKA/sg74000_SPC/12C_generic_270_3MM.Rda
HITXML/inst/extdata/FLUKA/sg74000_SPC/README.txt
HITXML/inst/extdata/FLUKA/sg74000_SPC/mgdraw_sg74000.f
HITXML/inst/extdata/FLUKA/sg74000_SPC/sg74000_GeneralSPC_template.flair
HITXML/inst/extdata/FLUKA/sg74000_SPC/sg74000_GeneralSPC_template.inp
HITXML/inst/extdata/FLUKA/sg74000_SPC/sg74000_GeneralSPCs.R
HITXML/inst/extdata/FLUKA/sg74001_DEDX
HITXML/inst/extdata/FLUKA/sg74001_DEDX/README.txt
HITXML/inst/extdata/FLUKA/sg74001_DEDX/dEdX_FLUKA_WATER.Rda
HITXML/inst/extdata/FLUKA/sg74001_DEDX/mgdraw_sg74001.f
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX.R
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-1001_dEdx
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-2001_dEdx
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-3001_dEdx
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-4001_dEdx
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-5001_dEdx
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template-6001_dEdx
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template.flair
HITXML/inst/extdata/FLUKA/sg74001_DEDX/sg74001_DEDX_template.inp
HITXML/inst/extdata/SOBP_sg73002.dat
HITXML/man
HITXML/man/HITXML-package.Rd
HITXML/man/HT.cost.function.Rd
HITXML/man/HT.optimize.field.Rd
HITXML/man/HX.compute.field.Rd
HITXML/man/Mass.Stopping.Power.MeV.cm2.g.Rd
HITXML/man/beam.spot.grid.Rd
HITXML/man/dataSIS-class.Rd
HITXML/man/dataSPC.Rd
HITXML/man/dataSpectrum-class.Rd
HITXML/man/dataSpectrum.Rd
HITXML/man/dose.Gy.Rd
HITXML/man/get.multivariate.weighted.histogram.Rd
HITXML/man/plot-dataSpectrum-method.Rd
HITXML/man/read.FLUKA.phase.space.Rd
HITXML/man/spectrum.Rd
HITXML/man/spectrum.at.depth.g.cm2.Rd
HITXML/man/total.n.particles.Rd
HITXML/src
HITXML/src/HITXML.cpp