HMSC: Hierarchical modelling of species community
Version 0.6-2

This package is design to analyse species community using hierarchical models. The package is based on the work of Ovaskainen and Soininen (2011) and generalize some aspect of the developments made within what was proposed in the paper. The package can perform linear as well as non-linear regression analysis. ** Future: It is meant to include models where species traits and phylogeny can also be considered.

AuthorF. Guillaume Blanchet
Date of publication2014-07-17 14:02:20
MaintainerF. Guillaume Blanchet <guillaume.blanchet@helsinki.fi>
LicenseGPL (>=2)
Version0.6-2
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HMSC", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

as.HMSC: Convert data, parameters, and priors to "HMSC" classes
erf: Error functions
hmsc: Hierarchical modelling of species community
HMSC-package: Hierarchical modelling of species community
ilogit: Inverse link functions
mixing: Mixing plot
scam: Single Component Adaptative Metropolis (SCAM) algorithm with...
See all...

All man pages Function index File listing

Man pages

as.HMSC: Convert data, parameters, and priors to "HMSC" classes
basicStatHMSC: Summary statistics of the model probabilities on an object of...
communitySimul: Simulate a species community
erf: Error functions
hmsc: Hierarchical modelling of species community
HMSC-package: Hierarchical modelling of species community
ilogit: Inverse link functions
loglikelihood: Log-likelihood of a regression model
mixing: Mixing plot
scam: Single Component Adaptative Metropolis (SCAM) algorithm with...

Functions

HMSC Man page
HMSC-package Man page
as.HMSCdata Man page Source code
as.HMSCparam Man page Source code
as.HMSCprior Man page Source code
basicStatHMSC Man page Source code
communitySimulH Man page Source code
communitySimulH.default Man page Source code
communitySimulH.formula Man page Source code
communitySimulHT Man page Source code
communitySimulHT.default Man page Source code
erf Man page Source code
erfc Man page Source code
g Man page
hmscH Man page Source code
hmscH.HMSCdata Man page Source code
hmscH.formula Man page Source code
hmscHT Man page Source code
hmscHT.HMSCdata Man page Source code
ilog Man page Source code
ilogit Man page Source code
inverf Man page Source code
inverfc Man page Source code
loglikelihood Man page Source code
loglikelihood.default Man page Source code
loglikelihood.formula Man page Source code
loglikelihood.matrix Man page Source code
mixing Man page Source code
parseformula Source code
plot.communitySimul Man page Source code
probit2link Source code
quantile.hmsc Man page Source code
scamH Man page Source code
scamH.HMSCdata Man page Source code
scamH.formula Man page Source code
scamHT Man page Source code
scamHT.HMSCdata Man page Source code
scamRandom Man page Source code
scamRandom.HMSCdata Man page Source code
summary.hmsc Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/as.HMSCdata.R
R/as.HMSCparam.R
R/as.HMSCprior.R
R/basicStatHMSC.R
R/communitySimulH.R
R/communitySimulH.default.R
R/communitySimulH.formula.R
R/communitySimulHT.R
R/communitySimulHT.default.R
R/erf.R
R/erfc.R
R/hmscH.HMSCdata.R
R/hmscH.R
R/hmscH.formula.R
R/hmscHT.HMSCdata.R
R/hmscHT.R
R/ilog.R
R/ilogit.R
R/inverf.R
R/inverfc.R
R/loglikelihood.R
R/loglikelihood.default.R
R/loglikelihood.formula.R
R/loglikelihood.matrix.R
R/mixing.R
R/parseformula.R
R/plot.communitySimul.R
R/probit2link.R
R/quantile.hmsc.R
R/scamH.HMSCdata.R
R/scamH.R
R/scamH.formula.R
R/scamHT.HMSCdata.R
R/scamHT.R
R/scamRandom.HMSCdata.R
R/scamRandom.R
R/summary.hmsc.R
man
man/HMSC-package.Rd
man/as.HMSC.Rd
man/basicStatHMSC.Rd
man/communitySimul.Rd
man/erf.Rd
man/hmsc.Rd
man/ilogit.Rd
man/loglikelihood.Rd
man/mixing.Rd
man/scam.Rd
HMSC documentation built on May 21, 2017, 4:16 a.m.

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