IsoGene: Order-Restricted Inference for Microarray Experiments
Version 1.0-24

Offers framework for testing for monotonic relationship between gene expression and doses in a microarray experiment. Several testing procedures including the global likelihood-ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations.

Getting started

Package details

AuthorDan Lin, Setia Pramana, Tobias Verbeke and Ziv Shkedy
Date of publication2015-07-23 12:32:36
MaintainerRudradev Sengupta <[email protected]>
LicenseGPL-3
Version1.0-24
Package repositoryView on R-Forge
Installation Install the latest version of this package by entering the following in R:
install.packages("IsoGene", repos="http://R-Forge.R-project.org")

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IsoGene documentation built on May 31, 2017, 2:24 a.m.