LIM: Linear Inverse Model examples and solution methods
Version 1.4.7

Functions that read and solve linear inverse problems (food web problems, linear programming problems). These problems find solutions to linear or quadratic functions: min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(ai*xi) subject to equality constraints Ex=f and inequality constraints Gx>=h. Uses package limSolve.

Browse man pages Browse package API and functions Browse package files

AuthorKarline Soetaert <karline.soetaert@nioz.nl>, Dick van Oevelen<dick.vanoevelen@nioz.nl>
Date of publication2015-10-06 06:33:55
MaintainerKarline Soetaert <karline.soetaert@nioz.nl>
LicenseGPL (>= 2)
Version1.4.7
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("LIM", repos="http://R-Forge.R-project.org")

Man pages

FILERigaAutumn: Input text "file" for gulf of Riga autumn planktonic food web
Flowmatrix: Generates a flow matrix for an inverse (foodweb) problem
Ldei: Solves a linear inverse model using least distance...
LIM: Linear Inverse Model examples and solution methods
LIMBlending: A blending problem specification
LIMBrouageMudflat: Linear inverse model specification for the Intertidal mudflat...
LIMCaliforniaSediment: Linear inverse model specification for the Santa Monica Basin...
LIMCoralRockall: Linear inverse model specification for the Deep-water Coral...
LIMEcoli: The Escherichia Coli Core Metabolism: Reaction network model...
LIMEverglades: Linear inverse model specification for the herpetological...
LIMRigaAutumn: Linear inverse model specification for the Gulf of Riga...
LIMRigaSpring: Linear inverse model specification for the Gulf of Riga...
LIMRigaSummer: Linear inverse model specification for the Gulf of Riga...
LIMScheldtIntertidal: Linear inverse model specification for the Schelde Intertidal...
LIMTakapoto: Linear inverse model specification for the Takapoto atoll...
Linp: Solves a linear inverse model using linear programming.
Lsei: Solves a linear inverse model using the least squares method.
plotranges: Plots the minimum and maximum and central values
PrintMat: Writes linear inverse matrices to the screen
Read: Reads an inverse input file
Setup: Creates linear inverse matrices
Variables: Generates the values of variables for a linear inverse...
Varranges: Generates ranges of the variables for a linear inverse...
Xranges: Generates ranges of the unknowns of a linear inverse problem
Xsample: Generates a random sample of the unknowns for a linear...

Functions

FILERigaAutumn Man page
Flowmatrix Man page Source code
LIM Man page
LIM-package Man page
LIMBlending Man page
LIMBrouageMudflat Man page
LIMCaliforniaSediment Man page
LIMCoralRockall Man page
LIMEcoli Man page
LIMEverglades Man page
LIMRigaAutumn Man page
LIMRigaSpring Man page
LIMRigaSummer Man page
LIMScheldtIntertidal Man page
LIMTakapoto Man page
LIMinputBlending Man page
Ldei Man page Source code
Ldei.character Man page Source code
Ldei.double Man page Source code
Ldei.lim Man page Source code
Ldei.limfile Man page Source code
Linp Man page Source code
Linp.character Man page Source code
Linp.double Man page Source code
Linp.lim Man page Source code
Linp.limfile Man page Source code
Lsei Man page Source code
Lsei.character Man page Source code
Lsei.double Man page Source code
Lsei.lim Man page Source code
Lsei.limfile Man page Source code
Plotranges Man page Source code
Plotranges.character Man page Source code
Plotranges.double Man page Source code
Plotranges.lim Man page Source code
PrintMat Man page Source code
Read Man page Source code
Setup Man page Source code
Setup.character Man page Source code
Setup.limfile Man page Source code
Setup.liminput Man page Source code
Variables Man page Source code
Varranges Man page Source code
Xranges Man page Source code
Xsample Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/Flowmatrix.R
R/LIM.r
R/Ldei.R
R/Linp.R
R/Lsei.R
R/Plotranges.R
R/Variables.R
R/Varranges.R
R/Xranges.R
R/Xsample.R
R/read.limfile.r
build
build/vignette.rds
data
data/FILERigaAutumn.rda
data/LIMBlending.rda
data/LIMBrouageMudflat.rda
data/LIMCaliforniaSediment.rda
data/LIMCoralRockall.rda
data/LIMEcoli.rda
data/LIMEverglades.rda
data/LIMRigaAutumn.rda
data/LIMRigaSpring.rda
data/LIMRigaSummer.rda
data/LIMScheldtIntertidal.rda
data/LIMTakapoto.rda
data/LIMinputBlending.rda
demo
demo/00Index
demo/LIMexamples.r
inst
inst/CITATION
inst/doc
inst/doc/LIM.Rnw
inst/doc/LIM.pdf
inst/doc/LIMecoli.R
inst/doc/LIMecoli.Rnw
inst/doc/LIMecoli.pdf
inst/doc/examples
inst/doc/examples/Foodweb
inst/doc/examples/Foodweb/BrouageMudflat.input
inst/doc/examples/Foodweb/CWC_Rockall.input
inst/doc/examples/Foodweb/CaliforniaSediment.input
inst/doc/examples/Foodweb/Coral
inst/doc/examples/Foodweb/Coral/CWC_Rockall_LO_scripts.R
inst/doc/examples/Foodweb/Coral/MCR.Rdata
inst/doc/examples/Foodweb/Everglades.input
inst/doc/examples/Foodweb/ExampleLIM_Underdetermined.input
inst/doc/examples/Foodweb/Hausgarten_LIMpackage.input
inst/doc/examples/Foodweb/LIM_Example.input
inst/doc/examples/Foodweb/RigaAutumn.input
inst/doc/examples/Foodweb/RigaSpring.input
inst/doc/examples/Foodweb/RigaSummer.input
inst/doc/examples/Foodweb/ScheldtIntertidal.input
inst/doc/examples/Foodweb/Takapoto.input
inst/doc/examples/Foodweb/foodweb.lim
inst/doc/examples/Foodweb/foodwebs.R
inst/doc/examples/Foodweb/simple.input
inst/doc/examples/LinearProg
inst/doc/examples/LinearProg/FoodManufacture.001
inst/doc/examples/LinearProg/Greenberg1.input
inst/doc/examples/LinearProg/Machines.input
inst/doc/examples/LinearProg/Refinery.001
inst/doc/examples/LinearProg/Simple.Input
inst/doc/examples/LinearProg/Vanderbei1.Input
inst/doc/examples/LinearProg/Vanderbei2.Input
inst/doc/examples/LinearProg/Vanderbei3.Input
inst/doc/examples/LinearProg/Vanderbei4.Input
inst/doc/examples/LinearProg/Vanderbei5.Input
inst/doc/examples/LinearProg/alloymixture.input
inst/doc/examples/LinearProg/blending.input
inst/doc/examples/LinearProg/diet.input
inst/doc/examples/LinearProg/linprog.lim
inst/doc/examples/LinearProg/linprogs.R
inst/doc/examples/LinearProg/manpower.001
inst/doc/examples/LinearProg/transportation.input
inst/doc/examples/Reactions
inst/doc/examples/Reactions/E_coli.lim
inst/doc/examples/Reactions/Hypothetical.lim
inst/doc/examples/Reactions/fba_simple.lim
inst/doc/examples/Reactions/reaction.lim
man
man/FILERigaAutumn.Rd
man/Flowmatrix.Rd
man/LIM.Rd
man/LIMBlending.Rd
man/LIMBrouageMudflat.Rd
man/LIMCaliforniaSediment.Rd
man/LIMCoralRockall.Rd
man/LIMEcoli.Rd
man/LIMEverglades.Rd
man/LIMRigaAutumn.Rd
man/LIMRigaSpring.Rd
man/LIMRigaSummer.Rd
man/LIMScheldtIntertidal.Rd
man/LIMTakapoto.Rd
man/Ldei.Rd
man/Linp.Rd
man/Lsei.Rd
man/PrintMat.Rd
man/Read.Rd
man/Setup.Rd
man/Variables.Rd
man/Varranges.Rd
man/Xranges.Rd
man/Xsample.Rd
man/plotranges.Rd
vignettes
vignettes/FigGeneral.pdf
vignettes/FigReaction.pdf
vignettes/FigWeb.pdf
vignettes/Figblending.pdf
vignettes/LIM.Rnw
vignettes/LIMecoli.Rnw
vignettes/vignettes.bib
LIM documentation built on May 21, 2017, 12:15 a.m.