Description Usage Format Author(s) References See Also Examples
Linear inverse model specification for the Gulf of Riga planktonic food web in *autumn* as in Donali et al. (1999).
The Gulf of Riga is a highly eutrophic system in the Baltic Sea.
The foodweb comprises 7 functional compartments and two external compartments, connected with 26 flows. Units of the flows are mg C/m3/day
The linear inverse model LIMRigaAutumn is generated from the file
RigaAutumn.input which can be found in subdirectory /examples/FoodWeb
of the package directory
In this subdirectory you will find many foodweb example input files
These files can be read using Read
and their output
processed by Setup
which will produce a linear inverse
problem specification similar to LIMRigaAutumn
1 |
a list of matrices, vectors, names and values that specify the linear inverse model problem.
see the return value of Setup
for more information
about this list
A more complete description of this structures is in vignette("LIM")
Karline Soetaert <karline.soetaert@nioz.nl>
Dick van Oevelen<dick.vanoevelen@nioz.nl>
Donali, E., Olli, K., Heiskanen, A.S., Andersen, T., 1999. Carbon flow patterns in the planktonic food web of the Gulf of Riga, the Baltic Sea: a reconstruction by the inverse method. Journal of Marine Systems 23, 251..268.
browseURL(paste(system.file(package="LIM"), "/doc/examples/Foodweb/", sep=""))
contains "RigaAutumn.input", the input file; read this with Setup
LIMTakapoto
, LIMRigaSummer
,
LIMRigaSpring
and many others
1 2 3 4 5 6 7 8 9 | rigaAutumn <- Flowmatrix(LIMRigaAutumn)
plotweb(rigaAutumn, main = "Gulf of Riga planktonic food web, autumn",
sub = "mgC/m3/day")
# ranges of flows
Plotranges(LIMRigaAutumn, lab.cex = 0.7, xlab = "mgC/m3/d",
main = "Gulf of Riga planktonic food web, autumn, Flowranges")
# ranges of variables
Plotranges(LIMRigaAutumn, type="V", lab.cex = 0.7, xlab = "mgC/m3/d",
main = "Gulf of Riga planktonic food web, autumn, variables")
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