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The package can get the methylation matrix and identify the differential methylation sites,elements or the regions who are in the elements of lncRNA etc. This package gets a matrix of methylation values of the samples. Then it can calculate the methylation values of elements. This package uses linear and t test to identify the differential methylation or the sites,elements and regions that related with the phenotype.
Package details 


Author  Hui Zhi,Yanxun Su,Xin Li 
Bioconductor views  DMR LncRNA Methylation Statistics 
Maintainer  Hui Zhi<zhihui013201@gmail.com> 
License  GPL2 
Version  1.0 
Package repository  View on RForge 
Installation 
Install the latest version of this package by entering the following in R:

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