The package can get the methylation matrix and identify the differential methylation sites,elements or the regions who are in the elements of lncRNA etc. This package gets a matrix of methylation values of the samples. Then it can calculate the methylation values of elements. This package uses linear and t test to identify the differential methylation or the sites,elements and regions that related with the phenotype.
|Author||Hui Zhi,Yanxun Su,Xin Li|
|Date of publication||2016-07-22 01:39:57|
dme: Find the differential methylation elements of lincRNA,...
dmr: Find the differential methylation regions in the elements of...
dms: Find the differential methylation CpG sites in the lincRNA,...
loaddata: Load and preprocessed raw data
regionLevel: Calculate the beta values of elements in lincRNA etc