API for MPAgenomics
Multi-Patient Analysis of Genomic Markers
| Global functions | |
|---|---|
| .MakeData | Source code |
| .alpha0all | Source code |
| .alphafun | Source code |
| .assignNames | Source code |
| .checkChipType | Source code |
| .convertChromosomeToArm | Source code |
| .countcl | Source code |
| .getCentromere | Source code |
| .minusEloglikreg | Source code |
| .posteriorp | Source code |
| .reallik4 | Source code |
| .reallikk4 | Source code |
| .sumreg | Source code |
| .sumsqreg | Source code |
| .totallik | Source code |
| .totallik2 | Source code |
| .varproffun | Source code |
| .varregtimescount | Source code |
| .xgivenknotrunc | Source code |
| CGHSEGaroma | Source code |
| CGHcall | Source code |
| CNAobjectToCGHcallObject | Man page Source code |
| ExpandCGHcall | Source code |
| HDlarsbivariate | Man page Source code |
| HDlarsbivariate2 | Source code |
| Lmethod | Source code |
| MPAgenomics | Man page |
| MPAgenomics-package | Man page |
| MPAgenomics-package, | Man page |
| PELT | Source code |
| PELTaroma | Source code |
| SNPselectionCNsignal | Source code |
| SNPselectionFracBsignal | Source code |
| SignalNormalization | Man page Source code |
| SingleStudyPlot | Source code |
| addChipType | Man page Source code |
| addData | Man page Source code |
| bestSegmentation | Source code |
| bestSegmentationBM | Source code |
| callingObject | Man page Source code |
| callingProcess | Man page Source code |
| cghseg | Source code |
| cnSegCallingProcess | Man page Source code |
| copyChipFiles | Source code |
| copyDataFiles | Source code |
| createArchitecture | Man page Source code |
| createEmptyArchitecture | Man page Source code |
| filterSeg | Man page Source code |
| findGender | Source code |
| findPlateau | Man page Source code |
| getComplementaryFile | Source code |
| getCopyNumberSignal | Man page Source code |
| getCopyNumberSignalPairedStudy | Source code |
| getCopyNumberSignalSingleStudy | Source code |
| getFracBSignal | Man page Source code |
| getFracBSignalPairedStudy | Source code |
| getFracBSignalSingleStudy | Source code |
| getGenotypeCalls | Man page Source code |
| getId | Source code |
| getListOfFiles | Man page Source code |
| getNormalTumorMatrix | Source code |
| getStatus | Source code |
| getSymFracBSignal | Man page Source code |
| is.wholenumber | Source code |
| knee | Source code |
| markerSelection | Man page Source code |
| modelSelection | Source code |
| naiveGenotypeCalls | Source code |
| postsegnormalize | Source code |
| segFracBSignal | Man page Source code |
| segmentation | Man page Source code |
| segmentationAroma | Man page Source code |
| segmentationObject | Man page Source code |
| signalPreProcess | Man page Source code |
| symmetrizeFracB | Man page Source code |
| tumorboost | Source code |
| tumorboostPlot | Source code |
| variableSelection | Man page Source code |
