createEmptyArchitecture: Create aroma architecture

In MPAgenomics: Multi-Patient Analysis of Genomic Markers

Description

Create the architecture required by aroma packages

Usage

createEmptyArchitecture(dataSetName, chipType, path = ".", verbose = TRUE)

Arguments

dataSetName	name of the data set
chipType	type of the chip used for obtaining the data
path	path where folders are created
verbose	if TRUE, print details of the process

Details

This function creates the following architecture: Architecture to create: <path> +- annotationData/ | +- chipTypes/ | +- <chipType>/ <– must match exactly the name of the CDF file (fullname minus tags) | +- CDF file(s) and other annotation (possibly subdirectories) | +- rawData/ +- <dataSetName>/ +- <chipType>/ <– must match exactly a chip type folder under annotationData/ +- CEL files

Author(s)

Quentin Grimonprez

MPAgenomics documentation built on Jan. 16, 2020, 3 p.m.