Man pages for MPAgenomics
Multi-Patient Analysis of Genomic Markers

addChipType	Add a new chip type to the existing aroma architecture
addData	Add a new data-set to the existing aroma architecture
callingObject	Create the list of parameters for callingProcess function
callingProcess	Calling aberrations in segmented copy-number signal.
CNAobjectToCGHcallObject	Convert CNAobject
cnSegCallingProcess	Segment a copy-number signal and call the found segments.
createArchitecture	Create aroma architecture and copy files
createEmptyArchitecture	Create aroma architecture
filterSeg	Filter segments
findPlateau	Find the best choice of segmentation parameter.
getCopyNumberSignal	Extract copy-number signal from aroma files
getFracBSignal	Extract allele B fraction signal from aroma files
getGenotypeCalls	Extract genotype calls from aroma files
getListOfFiles	Get the contents of a data folder
getSymFracBSignal	Extract symmetrized allele B fraction signal from aroma files
HDlarsbivariate	lars algorithm for bivariate signal
markerSelection	markers selection
MPAgenomics-package	Multi-Patient Analysis of Genomic Markers
segFracBSignal	segmentation function for the allele B fraction
segmentation	segmentation function
segmentationAroma	segmentation function
segmentationObject	Create the list of parameters for segmentation function
SignalNormalization	Normalization process
signalPreProcess	Normalization process
symmetrizeFracB	symmetrize an allele B fraction signal
variableSelection	SNPs selection