Description Usage Arguments Author(s) Examples
Parallel for the analyses of statistics of each SNP, such as SNP characterization statistics or association test statistics
1 |
npro |
number of processors on compute nodes |
fun |
function name will be process such as mlreg.p |
data |
object of snp.data-class |
data_f |
file name that was saved the input object of snp.data-class, the object must be named "data" |
... |
further arguments passed to function of fun argument |
Unitsa Sangket, Yurii S. Aulchenko and Surakameth Mahasirimongkol
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | #Example 1 (summit job on R)
################################################
#clear working space
rm(list = ls())
library(GenABEL)
library(ParallABEL)
formula=dm2~sex+age
data(ge03d2.clean)
data <- ge03d2.clean[,]
npro=2 # npro = number of processors on the compute-nodes
fun=mlreg.p
output.p = type1.p(npro,fun,data,formula=formula)
output.p[1:5,]
mpi.quit(save="no")
#################################################
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