Description Usage Arguments Value Note See Also Examples
View source: R/xGeneID2Symbol.r
xGeneID2Symbol
is supposed to convert gene symbols to entrez
geneid.
1 2 3 4 5 6 7 8 |
data |
an input vector containing gene symbols |
org |
a character specifying an organism. Currently supported organisms are 'human' and 'mouse'. It can be an object 'EG' |
details |
logical to indicate whether to result in a data frame (in great details). By default, it sets to false |
verbose |
logical to indicate whether the messages will be displayed in the screen. By default, it sets to false for no display |
RData.location |
the characters to tell the location of built-in
RData files. See |
guid |
a valid (5-character) Global Unique IDentifier for an OSF
project. See |
a vector containing symbol with 'NA' for the unmatched if (details set to false); otherwise, a data frame is returned
none.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | RData.location <- "http://galahad.well.ox.ac.uk/bigdata"
## Not run:
# a) provide the input Genes of interest (eg 100 randomly chosen human genes)
## load human genes
org.Hs.eg <- xRDataLoader(RData='org.Hs.eg')
GeneID <- sample(org.Hs.eg$gene_info$GeneID, 100)
GeneID
# b) convert into GeneID
Symbol <- xGeneID2Symbol(GeneID)
# c) convert into a data frame
df <- xGeneID2Symbol(GeneID, details=TRUE)
# advanced use
df <- xGeneID2Symbol(GeneID, org=org.Hs.eg, details=TRUE)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.