PreProcess: Basic Functions for Pre-Processing Microarrays

The PreProcess package defines OOMPA classes to pre-process microarray gene expression data.

Author
Kevin R. Coombes
Date of publication
2016-05-09 20:44:24
Maintainer
Kevin R. Coombes <krc@silicovore.com>
License
Apache License (== 2.0)
Version
3.1.2
URLs

View on R-Forge

Man pages

b00-0-generics-method
Methods "process" and "analyze"
b01-0-graph-utility
OOMPA graphical utility functions
b01-1-matrix-utility
OOMPA Matrix Utility Functions
b01-2-stat-utility
OOMPA Statistical Utility Functions
b03-0-ChannelType-class
Class "ChannelType"
b04-0-Channel-class
Class "Channel"
b05-0-Processor-class
Class "Processor"
b06-0-Pipeline-class
Class "Pipeline"
b07-0-CompleteChannel-class
Class "CompleteChannel"
b07-1-channelize-method
Method "channelize"

Files in this package

PreProcess/DESCRIPTION
PreProcess/NAMESPACE
PreProcess/NEWS
PreProcess/R
PreProcess/R/b00-generics.R
PreProcess/R/b01-utility.R
PreProcess/R/b03-channel-type.R
PreProcess/R/b04-channel.R
PreProcess/R/b05-processor.R
PreProcess/R/b06-pipeline.R
PreProcess/R/b07-complete-channel.R
PreProcess/build
PreProcess/build/vignette.rds
PreProcess/inst
PreProcess/inst/doc
PreProcess/inst/doc/oompa-prep.R
PreProcess/inst/doc/oompa-prep.Rnw
PreProcess/inst/doc/oompa-prep.pdf
PreProcess/man
PreProcess/man/b00-0-generics-method.Rd
PreProcess/man/b01-0-graph-utility.Rd
PreProcess/man/b01-1-matrix-utility.Rd
PreProcess/man/b01-2-stat-utility.Rd
PreProcess/man/b03-0-ChannelType-class.Rd
PreProcess/man/b04-0-Channel-class.Rd
PreProcess/man/b05-0-Processor-class.Rd
PreProcess/man/b06-0-Pipeline-class.Rd
PreProcess/man/b07-0-CompleteChannel-class.Rd
PreProcess/man/b07-1-channelize-method.Rd
PreProcess/tests
PreProcess/tests/test01-utility.R
PreProcess/tests/test01-utility.Rout.save
PreProcess/tests/test03-channel-type.R
PreProcess/tests/test03-channel-type.Rout.save
PreProcess/tests/test04-channel.R
PreProcess/tests/test04-channel.Rout.save
PreProcess/tests/test05-processor.R
PreProcess/tests/test05-processor.Rout.save
PreProcess/tests/test06-pipeline.R
PreProcess/tests/test06-pipeline.Rout.save
PreProcess/tests/test07-complete-channel.R
PreProcess/tests/test07-complete-channel.Rout.save
PreProcess/vignettes
PreProcess/vignettes/oompa-prep.Rnw