PreProcess: Basic Functions for Pre-Processing Microarrays
Version 3.1.3

The PreProcess package defines OOMPA classes to pre-process microarray gene expression data.

AuthorKevin R. Coombes
Bioconductor views Microarray PreProcessing
Date of publication2017-04-25 13:56:14
MaintainerKevin R. Coombes <krc@silicovore.com>
LicenseApache License (== 2.0)
Version3.1.3
URL http://oompa.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PreProcess", repos="http://R-Forge.R-project.org")

Popular man pages

b01-0-graph-utility: OOMPA graphical utility functions
b01-1-matrix-utility: OOMPA Matrix Utility Functions
b01-2-stat-utility: OOMPA Statistical Utility Functions
b04-0-Channel-class: Class "Channel"
b05-0-Processor-class: Class "Processor"
b06-0-Pipeline-class: Class "Pipeline"
b07-1-channelize-method: Method "channelize"
See all...

All man pages Function index File listing

Man pages

b00-0-generics-method: Methods "process" and "analyze"
b01-0-graph-utility: OOMPA graphical utility functions
b01-1-matrix-utility: OOMPA Matrix Utility Functions
b01-2-stat-utility: OOMPA Statistical Utility Functions
b03-0-ChannelType-class: Class "ChannelType"
b04-0-Channel-class: Class "Channel"
b05-0-Processor-class: Class "Processor"
b06-0-Pipeline-class: Class "Pipeline"
b07-0-CompleteChannel-class: Class "CompleteChannel"
b07-1-channelize-method: Method "channelize"

Functions

Channel Man page Source code
Channel-class Man page
ChannelType Man page Source code
ChannelType-class Man page
CompleteChannel Man page Source code
CompleteChannel-class Man page
PIPELINE.MDACC.DEFAULT Man page
PIPELINE.STANDARD Man page
PROC.BACKGROUND Man page
PROC.CORRECTED.SIGNAL Man page
PROC.GLOBAL.NORMALIZATION Man page
PROC.LOG.TRANSFORM Man page
PROC.MEDIAN.EXPRESSED.NORMALIZATION Man page
PROC.NEG.CORRECTED.SIGNAL Man page
PROC.SD.SIGNAL Man page
PROC.SIGNAL Man page
PROC.SIGNAL.TO.NOISE Man page
PROC.SUBSET.MEAN.NORMALIZATION Man page
PROC.SUBSET.NORMALIZATION Man page
PROC.SUBTRACTOR Man page
PROC.THRESHOLD Man page
Pipeline Man page
Pipeline-class Man page
Processor Man page
Processor-class Man page
analyze Man page
analyze,ANY-method Man page
analyze,CompleteChannel-method Man page
as.data.frame,CompleteChannel-method Man page
channelize Man page
channelize,ANY-method Man page
channelize,CompleteChannel-method Man page
channelize-method Man page
ellipse Man page
f.above.thresh Man page
f.cord Man page
f.oneway.rankings Man page Source code
f.plot3 Source code
f.qq Man page
f.qt Man page
fliplr Man page
flipud Man page
getDesign Man page Source code
hist,Channel-method Man page
image,Channel-method Man page
image,CompleteChannel-method Man page
makeDefaultPipeline Man page Source code
plot,Channel,missing-method Man page
plot,CompleteChannel,missing-method Man page
print,Channel-method Man page
print,ChannelType-method Man page
print,CompleteChannel-method Man page
process Man page
process,ANY,Pipeline-method Man page
process,ANY-method Man page
process,Channel,Processor-method Man page
process,CompleteChannel,Processor-method Man page
process,Processor-method Man page
setDesign Man page Source code
show,Channel-method Man page
show,ChannelType-method Man page
show,CompleteChannel-method Man page
summary,Channel-method Man page
summary,ChannelType-method Man page
summary,CompleteChannel-method Man page
summary,Pipeline-method Man page
summary,Processor-method Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/b00-generics.R
R/b01-utility.R
R/b03-channel-type.R
R/b04-channel.R
R/b05-processor.R
R/b06-pipeline.R
R/b07-complete-channel.R
build
build/vignette.rds
inst
inst/doc
inst/doc/oompa-prep.R
inst/doc/oompa-prep.Rnw
inst/doc/oompa-prep.pdf
man
man/b00-0-generics-method.Rd
man/b01-0-graph-utility.Rd
man/b01-1-matrix-utility.Rd
man/b01-2-stat-utility.Rd
man/b03-0-ChannelType-class.Rd
man/b04-0-Channel-class.Rd
man/b05-0-Processor-class.Rd
man/b06-0-Pipeline-class.Rd
man/b07-0-CompleteChannel-class.Rd
man/b07-1-channelize-method.Rd
tests
tests/test01-utility.R
tests/test01-utility.Rout.save
tests/test03-channel-type.R
tests/test03-channel-type.Rout.save
tests/test04-channel.R
tests/test04-channel.Rout.save
tests/test05-processor.R
tests/test05-processor.Rout.save
tests/test06-pipeline.R
tests/test06-pipeline.Rout.save
tests/test07-complete-channel.R
tests/test07-complete-channel.Rout.save
vignettes
vignettes/oompa-prep.Rnw
PreProcess documentation built on May 21, 2017, 1:36 a.m.

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