PreProcess: Basic Functions for Pre-Processing Microarrays

The PreProcess package defines OOMPA classes to pre-process microarray gene expression data.

AuthorKevin R. Coombes
Date of publication2016-05-09 20:44:24
MaintainerKevin R. Coombes <krc@silicovore.com>
LicenseApache License (== 2.0)
Version3.1.2
http://oompa.r-forge.r-project.org/

View on R-Forge

Functions

analyze Man page
analyze,ANY-method Man page
analyze,CompleteChannel-method Man page
as.data.frame,CompleteChannel-method Man page
Channel Man page
Channel-class Man page
channelize Man page
channelize,ANY-method Man page
channelize,CompleteChannel-method Man page
channelize-method Man page
ChannelType Man page
ChannelType-class Man page
CompleteChannel Man page
CompleteChannel-class Man page
ellipse Man page
f.above.thresh Man page
f.cord Man page
fliplr Man page
flipud Man page
f.oneway.rankings Man page
f.qq Man page
f.qt Man page
getDesign Man page
hist,Channel-method Man page
image,Channel-method Man page
image,CompleteChannel-method Man page
makeDefaultPipeline Man page
Pipeline Man page
Pipeline-class Man page
PIPELINE.MDACC.DEFAULT Man page
PIPELINE.STANDARD Man page
plot,Channel,missing-method Man page
plot,CompleteChannel,missing-method Man page
print,Channel-method Man page
print,ChannelType-method Man page
print,CompleteChannel-method Man page
PROC.BACKGROUND Man page
PROC.CORRECTED.SIGNAL Man page
process Man page
process,ANY-method Man page
process,ANY,Pipeline-method Man page
process,Channel,Processor-method Man page
process,CompleteChannel,Processor-method Man page
Processor Man page
Processor-class Man page
process,Processor-method Man page
PROC.GLOBAL.NORMALIZATION Man page
PROC.LOG.TRANSFORM Man page
PROC.MEDIAN.EXPRESSED.NORMALIZATION Man page
PROC.NEG.CORRECTED.SIGNAL Man page
PROC.SD.SIGNAL Man page
PROC.SIGNAL Man page
PROC.SIGNAL.TO.NOISE Man page
PROC.SUBSET.MEAN.NORMALIZATION Man page
PROC.SUBSET.NORMALIZATION Man page
PROC.SUBTRACTOR Man page
PROC.THRESHOLD Man page
setDesign Man page
show,Channel-method Man page
show,ChannelType-method Man page
show,CompleteChannel-method Man page
summary,Channel-method Man page
summary,ChannelType-method Man page
summary,CompleteChannel-method Man page
summary,Pipeline-method Man page
summary,Processor-method Man page

Files

PreProcess/DESCRIPTION
PreProcess/NAMESPACE
PreProcess/NEWS
PreProcess/R
PreProcess/R/b00-generics.R PreProcess/R/b01-utility.R PreProcess/R/b03-channel-type.R PreProcess/R/b04-channel.R PreProcess/R/b05-processor.R PreProcess/R/b06-pipeline.R PreProcess/R/b07-complete-channel.R
PreProcess/build
PreProcess/build/vignette.rds
PreProcess/inst
PreProcess/inst/doc
PreProcess/inst/doc/oompa-prep.R
PreProcess/inst/doc/oompa-prep.Rnw
PreProcess/inst/doc/oompa-prep.pdf
PreProcess/man
PreProcess/man/b00-0-generics-method.Rd PreProcess/man/b01-0-graph-utility.Rd PreProcess/man/b01-1-matrix-utility.Rd PreProcess/man/b01-2-stat-utility.Rd PreProcess/man/b03-0-ChannelType-class.Rd PreProcess/man/b04-0-Channel-class.Rd PreProcess/man/b05-0-Processor-class.Rd PreProcess/man/b06-0-Pipeline-class.Rd PreProcess/man/b07-0-CompleteChannel-class.Rd PreProcess/man/b07-1-channelize-method.Rd
PreProcess/tests
PreProcess/tests/test01-utility.R
PreProcess/tests/test01-utility.Rout.save
PreProcess/tests/test03-channel-type.R
PreProcess/tests/test03-channel-type.Rout.save
PreProcess/tests/test04-channel.R
PreProcess/tests/test04-channel.Rout.save
PreProcess/tests/test05-processor.R
PreProcess/tests/test05-processor.Rout.save
PreProcess/tests/test06-pipeline.R
PreProcess/tests/test06-pipeline.Rout.save
PreProcess/tests/test07-complete-channel.R
PreProcess/tests/test07-complete-channel.Rout.save
PreProcess/vignettes
PreProcess/vignettes/oompa-prep.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.