ProbeAnnotator: Faste Gene Annotation in R

This package provides fast and user friendly wrappers to C++ functions for gene annotation.

Author
Alexandre Thiery, Pierre Bady
Date of publication
2015-03-28 18:15:00
Maintainer
Alexandre Thiery <alexandre.thiery@unil.ch>
License
GPL (>= 2)
Version
0.99.1

View on R-Forge

Man pages

annotateBy
Fast Gene Annotation by Alignment or Chromosomal Location
annotateGetInfoFromOrganismtDb
Get gene information using EntrezID and OrganismDb
annotateGetRefFromTranscriptDb
Get mapping between reference and gene using TranscriptDb
ProbeAnnotator-package
ProbeAnnotator package
searchGene
Search a "gene" contained in a character vector

Files in this package

ProbeAnnotator/DESCRIPTION
ProbeAnnotator/NAMESPACE
ProbeAnnotator/R
ProbeAnnotator/R/ProbeAnnotator.R
ProbeAnnotator/R/annotateByAlignment.R
ProbeAnnotator/R/annotateByLocation.R
ProbeAnnotator/R/annotateGetInfoFromOrganismDb.R
ProbeAnnotator/R/annotateGetRefFromTranscriptDb.R
ProbeAnnotator/R/checkVector.R
ProbeAnnotator/R/searchGene.R
ProbeAnnotator/man
ProbeAnnotator/man/ProbeAnnotator-package.Rd
ProbeAnnotator/man/annotateBy.Rd
ProbeAnnotator/man/annotateGetInfoFromOrganismtDb.Rd
ProbeAnnotator/man/annotateGetRefFromTranscriptDb.Rd
ProbeAnnotator/man/searchGene.Rd
ProbeAnnotator/src
ProbeAnnotator/src/annotatorClass.h
ProbeAnnotator/src/byAlignment.cpp
ProbeAnnotator/src/byLocation.cpp
ProbeAnnotator/src/exports.cpp
ProbeAnnotator/src/structs.h