annotateGetInfoFromOrganismtDb: Get gene information using EntrezID and OrganismDb

In ProbeAnnotator: Faste Gene Annotation in R

Description

Gets the genes information in an OrganismDb using EntrezID keys.

Usage

annotateGetInfoFromOrganismtDb(orgDb, orgDb_Columns, sep_intra,
  verbose = FALSE)

Arguments

orgDb	A OrganismDb object. If orgDb is missing, the default org.Hs.eg.db will be used.
orgDb_Columns	A character vector, giving which columns to extract from the orgDb. Note that if orgDb_Columns is used, then the user selected columns will be selected instead of the default request on org.Hs.eg.db.
sep_intra	A character vector, giving the separator character for gene information, see details.
verbose	A logical value, indicating if messages should be printed. Default is FALSE.

Value

• txInfo A data.frame containing the genes' information.

• orgDb_Key A character vector, giving the EntrezID's column name.

• orgDb_Columns A character vector, giving the selected column names (see Arguments section).

Author(s)

Alexandre Thiery

ProbeAnnotator documentation built on May 2, 2019, 5:49 p.m.