R eddy processing package with MDS gap filling algorithm, adopted after PV-Wave source code from Markus Reichstein.
The official R-Forge site of this package is here: urlhttp://r-forge.r-project.org/projects/reddyproc/.
A general description and an online tool based on this package can be found here: http://www.bgc-jena.mpg.de/bgi/index.php/Services/REddyProcWeb.
A first overview of the REddyProc functions:
A detailed example of the processing can be found under
These functions help with the preparation of your data for the analysis:
Loading text files into dataframes:
Preparing a proper time stamp:
Calculating latent variables, e.g. VPD:
Then the data can be processed in an R5 reference class framework:
Initalizing the R5 reference class:
Estimating the turbulence criterion, Ustar threshold, for omitting data from periods of low turbulence:
Flux partitioning based on Night-Time:
Flux partitioning based on Day-Time:
Before or after processing, the data can be plotted:
Half-hourly fluxes and their daily means:
Daily sums (and their uncertainties):
A complete list of REddyProc functions be viewed by clicking on the Index link at the bottom of this help page.
Also have a look at the package vignettes: get a list with
vignette(package = "REddyProc"), view with
Department for Biogeochemical Integration at MPI-BGC, Jena, Germany
Reichstein M, Falge E, Baldocchi D et al. (2005) On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm. Global Change Biology, 11, 1424-1439.
#+++ Detailed example code can be found here: help('sEddyProc.example')
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