qPCRBatch-class: Class qPCRBatch

In ReadqPCR: Read qPCR data

Description

Class to Contain and Describe raw and normalised qPCR Data, as Ct or delta-Ct values. Extends eSet

Creating Objects

new("qPCRBatch")

Slots

assayData:

Object of class AssayData containing the raw data, which will be at minimum a matrix of Ct values. This slot can also hold a matrix of well.info values if these are present in the input file read in by read.qPCR or read.taqman

phenoData:

Object of class AnnotatedDataFrame containing phenotypic data for the samples.

annotation

A character string identifying the annotation that may be used for the ExpressionSet instance.

protocolData:

Object of class AnnotatedDataFrame containing protocol data for the samples.

featureData

Object of class AnnotatedDataFrame containing feature-level (e.g., probeset-level) information.

experimentData:

Object of class "MIAME" containing experiment-level information.

.__classVersion__:

Object of class Versions describing the R and Biobase version number used to create the instance. Intended for developer use.

Methods

exprs

signature(object = "qPCRBatch"): extracts the Ct expression matrix.

exprs<-

signature(object = "qPCRBatch", value = "matrix"): replaces the Ct expression matrix.

exprs.well.order

signature(object = "qPCRBatch"): extracts the Ct well order matrix (if it exists).

exprs.well.order<-

signature(object = "qPCRBatch", value = "matrix"): replaces the Ct well order matrix.

Note

This class is better described in the vignette.

Author(s)

James Perkins

See Also

eSet

ReadqPCR documentation built on May 2, 2019, 5:17 p.m.