Description Usage Arguments Details Value Author(s) See Also Examples
Reads Taqman RT-qPCR data and uses the data to populate an object of class
"qPCRBatch"
.
1 2 3 4 5 | read.taqman(...,
filenames = character(0),
phenoData = new("AnnotatedDataFrame"),
notes = "",
verbose = FALSE)
|
... |
file names separated by comma. |
filenames |
file names in a character vector. |
phenoData |
an
|
notes |
notes. |
verbose |
verbosity flag. If true more messages are given to the user on the processing steps |
Permits the user to read in qPCR Ct value data from an sds output file,
alongside phenotypic data and further notes about the data. If phenoData
is a data.frame
, it is converted to an AnnotatedDataFrame
. If it
is NULL
then a default object of class AnnotatedDataFrame
is
created, whose pData
is a data.frame
with rownames being the
names of the , and with one column sample
with an integer index.
More details on how technical replicates are handled in the ReadqPCR
package vignette
Object of class "qPCRBatch"
.
James Perkins jperkins@biochem.ucl.ac.uk
1 2 3 4 5 6 7 8 | path <- system.file("exData", package = "ReadqPCR")
# read 1 file
taqman.example <- file.path(path, "example.txt")
qPCRBatch.taq <- read.taqman(taqman.example)
# read 2 files
taqman.example.second.file <- file.path(path, "example2.txt")
qPCRBatch.taq.two.files <- read.taqman(taqman.example,
taqman.example.second.file)
|
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