SoilR: Models of Soil Organic Matter Decomposition

Functions for modeling Soil Organic Matter decomposition in terrestrial ecosystems with linear and nonlinear models.

AuthorCarlos A. Sierra, Markus Mueller
Date of publication2016-07-25 20:03:57
MaintainerMarkus Mueller <mamueller@bgc-jena.mpg.de>
LicenseGPL-3
Version1.1-29

View on R-Forge

Man pages

1: Converts from Delta14C to Absolute Fraction Modern

10: ~~ Methods for Function 'availableParticleProperties' ~~

100: ~~ Methods for Function 'getAccumulatedRelease' ~~

101: Calculates the accumulated carbon release from the pools as a...

102: getC14 method Model 14

103: ~~ Methods for Function 'getC14' ~~

104: Calculates the mass of radiocarbon (14C fraction times C...

105: getC method Model

106: ~~ Methods for Function 'getC' ~~

107: Calculates the C content of the pools

108: ~~ Methods for Function 'getCumulativeC' ~~

109: ~~ Methods for Function 'getDecompOp' ~~

11: ~~ Methods for Function 'availableParticleSets' ~~

110: ~~ Methods for Function 'getDotOut' ~~

111: read access to the models F14C variable

112: ~~ Methods for Function 'getF14C' ~~

113: Calculates the average radiocarbon fraction weighted by the...

114: radiocarbon

115: ~~ Methods for Function 'getF14' ~~

116: Calculates the 14C fraction of all pools

117: average radiocarbon fraction weighted by carbonrelease

118: ~~ Methods for Function 'getF14R' ~~

119: Calculates the average radiocarbon fraction weighted by the...

12: ~~ Methods for Function 'availableResidentSets' ~~

120: extract the format string

121: ~~ Methods for Function 'getFormat' ~~

122: creates a constant timedependent function and returns it

123: getFunctionDefinition method DecompositionOperator

124: ~~ Methods for Function 'getFunctionDefinition' ~~

125: getFunctionDefinition method TimeMap

126: getFunctionDefinition

127: ~~ Methods for Function 'getInFluxes' ~~

128: ~~ Methods for Function 'getInitialValues' ~~

129: compute the mean transit time

13: Implementation of the microbial model AWB (Allison,...

130: ~~ Methods for Function 'getMeanTransitTime' ~~

131: Access to the mean transit time

132: ~~ Methods for Function 'getNumberOfPools' ~~

133: ~~ Methods for Function 'getOutputFluxes' ~~

134: ~~ Methods for Function 'getOutputReceivers' ~~

135: ~~ Methods for Function 'getParticleMonteCarloSimulator' ~~

136: 14C respiration rate for all pools

137: ~~ Methods for Function 'getReleaseFlux14' ~~

138: Calculates the mass of radiocarbon in the release flux (14C...

139: get the release rate for all pools

14: Implementation of the microbial model Bacwave (bacterial...

140: ~~ Methods for Function 'getReleaseFlux' ~~

141: Calculates the release of C from each pool

142: return an (infinite) time range since the operator is...

143: ask for the boundaries of the underlying time interval

144: ~~ Methods for Function 'getTimeRange' ~~

145: ask for the boundaries of the underlying time interval

146: getTimeRange

147: getTimes method Model

148: ~~ Methods for Function 'getTimes' ~~

149: Extracts the times argument

15: Binding of pre- and post-bomb Delta14C curves

150: ~~ Methods for Function 'getTransferCoefficients' ~~

151: ~~ Methods for Function 'getTransferMatrix' ~~

152: compute the TransitTimeDistributionDensity

153: ~~ Methods for Function 'getTransitTimeDistributionDensity'...

154: methods for transit time distributions

155: ~~ Methods for Function 'getValues' ~~

156: Delta14C in soil CO2 efflux from Harvard Forest

157: Atmospheric radiocarbon for the period 1950-2010 from Hua et...

158: Implementation of the Introductory Carbon Balance Model...

159: Class '"InFlux"'

16: Class '"BoundFc"'

160: pass through constructor

161: ~~ Methods for Function 'InFlux' ~~

162: create a BoundInFlux from a TimeMap object

163: internal constructor (new)

164: internal constructor

165: initialize called by (new)

166: An internal constructor for 'Model_14' objects not...

167: internal constructor for Model objects

168: ~~ Methods for Function 'initialize' ~~

169: initialize called by (new)

17: constructor

170: Northern Hemisphere atmospheric radiocarbon for the pre-bomb...

171: Atmospheric radiocarbon for the 0-50,000 yr BP period

172: Add lines with the output of 'getC14', 'getC', or...

173: Class '"Model_14"'

174: ~~ Methods for Function 'Model_14' ~~

175: A general constructor

176: Class '"Model"'

177: general constructor for class Model

178: ~~ Methods for Function 'Model' ~~

179: A general constructor

18: constructor

180: Implementation of a one-pool C14 model

181: Implementation of a one pool model

182: ParallelModel

183: Plots the output of 'getF14' for each pool over time

184: Plots the output of 'getC' or 'getReleaseFlux' for each pool...

185: not yet implemented method to plot an overview of several...

186: ~~ Methods for Function 'plot' ~~

187: not yet implemented method to print an overview of several...

188: ~~ Methods for Function 'print' ~~

189: helper function to compute respiration coefficients

19: constructor

190: Implementation of the RothCModel

191: General m-pool linear C14 model with series structure

192: General m-pool linear model with series structure

193: show method Model

194: ~~ Methods for Function 'show' ~~

195: Models of Soil Organic Matter Decomposition

196: summary method Model

197: ~~ Methods for Function 'summary' ~~

198: System and pool age for compartment models

199: Implementation of a 6-pool Michaelis-Menten model

2: Converts from Delta14C to Absolute Fraction Modern

20: constructor

200: Implementation of a three-pool C14 model with feedback...

201: Implementation of a three pool model with feedback structure

202: Implementation of a three-pool C14 model with parallel...

203: Implementation of a three pool model with parallel structure

204: Implementation of a three-pool C14 model with series...

205: Implementation of a three pool model with series structure

206: Class '"TimeMap"'

207: TimeMap from Dataframe

208: constructor

209: constructor

21: constructor

210: ~~ Methods for Function 'TimeMap' ~~

211: deprecated constructor of the class TimeMap.

212: generic constructor

213: Transit times for compartment models

214: Estimation of the turnover time from a soil radiocarbon...

215: Implementation of a two-pool C14 model with feedback...

216: Implementation of a two pool model with feedback structure

217: Implementation of a two-pool Michaelis-Menten model

218: Implementation of a two-pool C14 model with parallel...

219: Implementation of a linear two pool model with parallel...

22: constructor

220: Implementation of a two-pool C14 model with series structure

221: Implementation of a two pool model with series structure

222: Implementation of the Yasso07 model

223: Implementation of the Yasso model.

224: (experimenta) partially overload [ ] for models

225: ~~ Methods for Function '[' ~~

226: ~~ Methods for Function '[[<-' ~~

227: ~~ Methods for Function '[[' ~~

228: ~~ Methods for Function '$' ~~

23: ~~ Methods for Function 'BoundFc' ~~

24: generic constructor

25: Class '"BoundInFlux"'

26: constructor

27: constructor

28: constructor

29: constructor

3: ~~ Methods for Function...

30: ~~ Methods for Function 'BoundInFlux' ~~

31: convert to BoundInFlux

32: generic constructor

33: Class '"BoundLinDecompOp"'

34: convert a ConstLinDecompOp to a BoundLinDecompOp

35: a constructor

36: a constructor

37: ~~ Methods for Function 'BoundLinDecompOp' ~~

38: create a BoundLinDecompOp from a TimeMap

39: Generic constructor

4: Converts its argument to an Absolute Fraction Modern...

40: Post-bomb atmospheric 14C fraction

41: Atmospheric 14C fraction

42: Implementation of the Century model

43: ~~ Methods for Function 'computeResults' ~~

44: creates an object containing the initial values for the 14C...

45: Class '"ConstLinDecompOp"'

46: construct from matric

47: ~~ Methods for Function 'ConstLinDecompOp' ~~

48: Generic constructor

49: Class '"DecompOp"'

5: convert to Absolute Fraction Normal values

50: pass through constructor

51: creates a ConstanDecompOp from a matrix

52: ~~ Methods for Function 'DecompOp' ~~

53: creates a BoundLinDecompOp from a TimeMap object

54: Class '"DecompositionOperator"'

55: Converts Absolute Fraction Modern values to Delta14C

56: Converts to Delta14C format

57: ~~ Methods for Function...

58: Converts its argument from an Absolute Fraction Modern to a...

59: convert to Absolute Fraction Normal values

6: ~~ Methods for Function 'AbsoluteFractionModern' ~~

60: ~~ Methods for Function 'Delta14C' ~~

61: deSolve lsoda wrapper

62: Soil CO2 efflux from an incubation experiment

63: ~~ Methods for Function 'fromDataFrame' ~~

64: assemble the objects components

65: Effects of temperature on decomposition rates according the...

66: Effects of temperature on decomposition rates according the...

67: Effects of temperature on decomposition rates according the...

68: Effects of temperature on decomposition rates according to...

69: Effects of temperature on decomposition rates according to...

7: ~~ Methods for Function 'as.character' ~~

70: Effects of temperature on decomposition rates according to...

71: Effects of temperature on decomposition rates according to a...

72: Effects of temperature on decomposition rates according to a...

73: Effects of temperature on decomposition rates according to a...

74: Effects of temperature on decomposition rates according to a...

75: Effects of temperature on decomposition rates according to...

76: Effects of temperature on decomposition rates according to...

77: Effects of moisture on decomposition rates according to the...

78: Effects of moisture on decomposition rates according to the...

79: Effects of moisture on decomposition rates according to the...

8: convert TimeMap Objects to something printable.

80: Effects of moisture on decomposition rates according to the...

81: Effects of moisture on decomposition rates according to the...

82: Effects of moisture on decomposition rates according to the...

83: Effects of moisture on decomposition rates according to the...

84: Effects of moisture on decomposition rates according to the...

85: Effects of moisture on decomposition rates according to the...

86: Effects of moisture on decomposition rates according to the...

87: Implementation of a the six-pool C14 model proposed by...

88: a constructor for class Model

89: a constructor for class Model_14

9: creates a character representation of the object in question

90: a constructor for class Model <- 14

91: a constructor for class Model_ 14

92: a constructor for class Model

93: a constructor for class Model

94: ~~ Methods for Function 'GeneralModel_14' ~~

95: A general constructor

96: a constructor for class Model

97: ~~ Methods for Function 'GeneralModel' ~~

98: A general constructor

99: time integrals of release fluxes per pool

manMan/as.character: creates a character representation of the object in question

manMan/C14Atm: Atmospheric 14C fraction

manMan/C14Atm_NH: Post-bomb atmospheric 14C fraction

manMan/eCO2: Soil CO2 efflux from an incubation experiment

manMan/HarvardForest14CO2: Delta14C in soil CO2 efflux from Harvard Forest

manMan/Hua2013: Atmospheric radiocarbon for the period 1950-2010 from Hua et...

manMan/IntCal09: Northern Hemisphere atmospheric radiocarbon for the pre-bomb...

manMan/IntCal13: Atmospheric radiocarbon for the 0-50,000 yr BP period

Files in this package

SoilR/DESCRIPTION
SoilR/NAMESPACE
SoilR/NEWS
SoilR/R
SoilR/R/1_GenericFunctions.R SoilR/R/1_HelperFunctions.R SoilR/R/1_TimeMap.R SoilR/R/2_InFlux.R SoilR/R/3_BoundInFlux.R SoilR/R/3_RespirationCoefficients.R SoilR/R/3_TransportDecompositionOperator.R SoilR/R/3_deSolve.lsoda.wrapper.R SoilR/R/4_NlModel.R SoilR/R/4_SoilR.F0__deprecated_in_1.2.R SoilR/R/5_MCSim.R SoilR/R/6_DecopmOp.R SoilR/R/7_BoundLinDecompOp.R SoilR/R/7_DecompositionOperator_deprecated_in_1.2.R SoilR/R/7_Model.R SoilR/R/AWBmodel.R SoilR/R/BoundFc.R SoilR/R/CenturyModel.R SoilR/R/ConstFc.R SoilR/R/ConstantDecompositionOperator.R SoilR/R/FcAtm_deprecated_in_1.2.R SoilR/R/GaudinskiModel14.R SoilR/R/GeneralModelMethods.R SoilR/R/GeneralModel_14Methods.R SoilR/R/GeneralNlModel.R SoilR/R/ICBMModel.R SoilR/R/MeanAge.R SoilR/R/MeanTT.R SoilR/R/Model_14.R SoilR/R/NpYdot.R SoilR/R/OnepModel.R SoilR/R/OnepModel14.R SoilR/R/ParallelModel.R SoilR/R/RothCModel.R SoilR/R/SeriesLinearModel.R SoilR/R/SeriesLinearModel14.R SoilR/R/SoilR.euler.R SoilR/R/ThreepFeedbackModel.R SoilR/R/ThreepFeedbackModel14.R SoilR/R/ThreepParallelModel.R SoilR/R/ThreepParallelModel14.R SoilR/R/ThreepSeriesModel.R SoilR/R/ThreepSeriesModel14.R SoilR/R/ThreepairMMmodel.R SoilR/R/TwopFeedbackModel.R SoilR/R/TwopFeedbackModel14.R SoilR/R/TwopMMmodel.R SoilR/R/TwopParallelModel.R SoilR/R/TwopParallelModel14.R SoilR/R/TwopSeriesModel.R SoilR/R/TwopSeriesModel14.R SoilR/R/Yasso07Model.R SoilR/R/YassoModel.R SoilR/R/bacwaveModel.R SoilR/R/bind.C14curves.R SoilR/R/fT.Arrhenius.R SoilR/R/fT.Century1.R SoilR/R/fT.Century2.R SoilR/R/fT.Daycent1.R SoilR/R/fT.Daycent2.R SoilR/R/fT.Demeter.R SoilR/R/fT.KB.R SoilR/R/fT.LandT.R SoilR/R/fT.Q10.R SoilR/R/fT.RothC.R SoilR/R/fT.Standcarb.R SoilR/R/fT.linear.R SoilR/R/fW.Candy.R SoilR/R/fW.Century.R SoilR/R/fW.Daycent1.R SoilR/R/fW.Daycent2.R SoilR/R/fW.Demeter.R SoilR/R/fW.Gompertz.R SoilR/R/fW.Moyano.R SoilR/R/fW.RothC.R SoilR/R/fW.Skopp.R SoilR/R/fW.Standcarb.R SoilR/R/linMaker.R SoilR/R/linesCPool.R SoilR/R/plotC14Pool.R SoilR/R/plotCPool.R SoilR/R/solver.R SoilR/R/spectralNorm.R SoilR/R/supported14CFractionFormats.R SoilR/R/systemAge.R SoilR/R/testhelpers.R SoilR/R/transitTime.R SoilR/R/turnoverFit.R SoilR/R/vecFuncMaker.R SoilR/R/warnings.R
SoilR/build
SoilR/build/partial.rdb
SoilR/build/vignette.rds
SoilR/data
SoilR/data/C14Atm.rda
SoilR/data/C14Atm_NH.rda
SoilR/data/HarvardForest14CO2.rda
SoilR/data/Hua2013.rda
SoilR/data/IntCal09.rda
SoilR/data/IntCal13.rda
SoilR/data/eCO2.rda
SoilR/inst
SoilR/inst/CITATION
SoilR/inst/doc
SoilR/inst/doc/GeneralModel.R
SoilR/inst/doc/GeneralModel.Rnw
SoilR/inst/doc/GeneralModel.pdf
SoilR/inst/doc/ParameterEstimation.R
SoilR/inst/doc/ParameterEstimation.Rnw
SoilR/inst/doc/ParameterEstimation.pdf
SoilR/inst/extdata
SoilR/inst/extdata/inputFluxForVignetteGeneralModel
SoilR/inst/extdata/inputFluxForVignetteGeneralModelShort
SoilR/inst/tests
SoilR/inst/tests/GlobalEmissions.csv
SoilR/inst/tests/Rtest.R
SoilR/inst/tests/addHeader.sh
SoilR/inst/tests/all.R
SoilR/inst/tests/c14test.R
SoilR/inst/tests/cRtest.sh
SoilR/inst/tests/csall.sh
SoilR/inst/tests/doubleExp.R
SoilR/inst/tests/exall.R
SoilR/inst/tests/example.GeneralModel_14.R
SoilR/inst/tests/example.getC.R
SoilR/inst/tests/example.getF14R_method__Model_14.R
SoilR/inst/tests/example.getReleaseFlux14_method__Model_14.R
SoilR/inst/tests/example.getReleaseFlux_method__Model.R
SoilR/inst/tests/example.getTimeRange_method__TimeMap.R
SoilR/inst/tests/example.initialize_method__Model.R
SoilR/inst/tests/example.initialize_method__Model_14.R
SoilR/inst/tests/prolog.R
SoilR/inst/tests/runit.2TwopSerial_linear_vs_nonlinear.R
SoilR/inst/tests/runit.BackwardTransferTime.R
SoilR/inst/tests/runit.BoundFc.R
SoilR/inst/tests/runit.BoundLinDecomOp.R
SoilR/inst/tests/runit.Conversion.R
SoilR/inst/tests/runit.DeprecationWarnings.R
SoilR/inst/tests/runit.Interfaces.R
SoilR/inst/tests/runit.LinearDecompositionOperator.R
SoilR/inst/tests/runit.MeanAge.R
SoilR/inst/tests/runit.MeanAge2.R
SoilR/inst/tests/runit.MeanAge3.R
SoilR/inst/tests/runit.Model.R
SoilR/inst/tests/runit.Model_14.R
SoilR/inst/tests/runit.NlModel.R
SoilR/inst/tests/runit.NonlinearAtmosphericModel.R
SoilR/inst/tests/runit.SoilRF0.R
SoilR/inst/tests/runit.SoilRPaper1.R
SoilR/inst/tests/runit.ThreepFeedback_MCSim.R
SoilR/inst/tests/runit.ThreepSerialFeedback_linear_vs_nonlinear.R
SoilR/inst/tests/runit.ThreepSerial_linear_vs_nonlinear.R
SoilR/inst/tests/runit.TimeMap.R
SoilR/inst/tests/runit.TimeReversedSolution.R
SoilR/inst/tests/runit.TwopSerial_MCSim.R
SoilR/inst/tests/runit.TwopSerial_linear_vs_nonlinear.R
SoilR/inst/tests/runit.check.pass.R
SoilR/inst/tests/runit.formatConversion.R
SoilR/inst/tests/runit.manuel.Manzoni.op.R
SoilR/inst/tests/runit.nonlinear.R
SoilR/inst/tests/runit.operators.R
SoilR/inst/tests/runit.testNumberOfPools.R
SoilR/inst/tests/runit.turnoverFit.R
SoilR/inst/tests/sall.R
SoilR/inst/tests/single_test.R
SoilR/inst/tests/testhelpers.R
SoilR/man
SoilR/man/1.Rd SoilR/man/10.Rd SoilR/man/100.Rd SoilR/man/101.Rd SoilR/man/102.Rd SoilR/man/103.Rd SoilR/man/104.Rd SoilR/man/105.Rd SoilR/man/106.Rd SoilR/man/107.Rd SoilR/man/108.Rd SoilR/man/109.Rd SoilR/man/11.Rd SoilR/man/110.Rd SoilR/man/111.Rd SoilR/man/112.Rd SoilR/man/113.Rd SoilR/man/114.Rd SoilR/man/115.Rd SoilR/man/116.Rd SoilR/man/117.Rd SoilR/man/118.Rd SoilR/man/119.Rd SoilR/man/12.Rd SoilR/man/120.Rd SoilR/man/121.Rd SoilR/man/122.Rd SoilR/man/123.Rd SoilR/man/124.Rd SoilR/man/125.Rd SoilR/man/126.Rd SoilR/man/127.Rd SoilR/man/128.Rd SoilR/man/129.Rd SoilR/man/13.Rd SoilR/man/130.Rd SoilR/man/131.Rd SoilR/man/132.Rd SoilR/man/133.Rd SoilR/man/134.Rd SoilR/man/135.Rd SoilR/man/136.Rd SoilR/man/137.Rd SoilR/man/138.Rd SoilR/man/139.Rd SoilR/man/14.Rd SoilR/man/140.Rd SoilR/man/141.Rd SoilR/man/142.Rd SoilR/man/143.Rd SoilR/man/144.Rd SoilR/man/145.Rd SoilR/man/146.Rd SoilR/man/147.Rd SoilR/man/148.Rd SoilR/man/149.Rd SoilR/man/15.Rd SoilR/man/150.Rd SoilR/man/151.Rd SoilR/man/152.Rd SoilR/man/153.Rd SoilR/man/154.Rd SoilR/man/155.Rd SoilR/man/156.Rd SoilR/man/157.Rd SoilR/man/158.Rd SoilR/man/159.Rd SoilR/man/16.Rd SoilR/man/160.Rd SoilR/man/161.Rd SoilR/man/162.Rd SoilR/man/163.Rd SoilR/man/164.Rd SoilR/man/165.Rd SoilR/man/166.Rd SoilR/man/167.Rd SoilR/man/168.Rd SoilR/man/169.Rd SoilR/man/17.Rd SoilR/man/170.Rd SoilR/man/171.Rd SoilR/man/172.Rd SoilR/man/173.Rd SoilR/man/174.Rd SoilR/man/175.Rd SoilR/man/176.Rd SoilR/man/177.Rd SoilR/man/178.Rd SoilR/man/179.Rd SoilR/man/18.Rd SoilR/man/180.Rd SoilR/man/181.Rd SoilR/man/182.Rd SoilR/man/183.Rd SoilR/man/184.Rd SoilR/man/185.Rd SoilR/man/186.Rd SoilR/man/187.Rd SoilR/man/188.Rd SoilR/man/189.Rd SoilR/man/19.Rd SoilR/man/190.Rd SoilR/man/191.Rd SoilR/man/192.Rd SoilR/man/193.Rd SoilR/man/194.Rd SoilR/man/195.Rd SoilR/man/196.Rd SoilR/man/197.Rd SoilR/man/198.Rd SoilR/man/199.Rd SoilR/man/2.Rd SoilR/man/20.Rd SoilR/man/200.Rd SoilR/man/201.Rd SoilR/man/202.Rd SoilR/man/203.Rd SoilR/man/204.Rd SoilR/man/205.Rd SoilR/man/206.Rd SoilR/man/207.Rd SoilR/man/208.Rd SoilR/man/209.Rd SoilR/man/21.Rd SoilR/man/210.Rd SoilR/man/211.Rd SoilR/man/212.Rd SoilR/man/213.Rd SoilR/man/214.Rd SoilR/man/215.Rd SoilR/man/216.Rd SoilR/man/217.Rd SoilR/man/218.Rd SoilR/man/219.Rd SoilR/man/22.Rd SoilR/man/220.Rd SoilR/man/221.Rd SoilR/man/222.Rd SoilR/man/223.Rd SoilR/man/224.Rd SoilR/man/225.Rd SoilR/man/226.Rd SoilR/man/227.Rd SoilR/man/228.Rd SoilR/man/23.Rd SoilR/man/24.Rd SoilR/man/25.Rd SoilR/man/26.Rd SoilR/man/27.Rd SoilR/man/28.Rd SoilR/man/29.Rd SoilR/man/3.Rd SoilR/man/30.Rd SoilR/man/31.Rd SoilR/man/32.Rd SoilR/man/33.Rd SoilR/man/34.Rd SoilR/man/35.Rd SoilR/man/36.Rd SoilR/man/37.Rd SoilR/man/38.Rd SoilR/man/39.Rd SoilR/man/4.Rd SoilR/man/40.Rd SoilR/man/41.Rd SoilR/man/42.Rd SoilR/man/43.Rd SoilR/man/44.Rd SoilR/man/45.Rd SoilR/man/46.Rd SoilR/man/47.Rd SoilR/man/48.Rd SoilR/man/49.Rd SoilR/man/5.Rd SoilR/man/50.Rd SoilR/man/51.Rd SoilR/man/52.Rd SoilR/man/53.Rd SoilR/man/54.Rd SoilR/man/55.Rd SoilR/man/56.Rd SoilR/man/57.Rd SoilR/man/58.Rd SoilR/man/59.Rd SoilR/man/6.Rd SoilR/man/60.Rd SoilR/man/61.Rd SoilR/man/62.Rd SoilR/man/63.Rd SoilR/man/64.Rd SoilR/man/65.Rd SoilR/man/66.Rd SoilR/man/67.Rd SoilR/man/68.Rd SoilR/man/69.Rd SoilR/man/7.Rd SoilR/man/70.Rd SoilR/man/71.Rd SoilR/man/72.Rd SoilR/man/73.Rd SoilR/man/74.Rd SoilR/man/75.Rd SoilR/man/76.Rd SoilR/man/77.Rd SoilR/man/78.Rd SoilR/man/79.Rd SoilR/man/8.Rd SoilR/man/80.Rd SoilR/man/81.Rd SoilR/man/82.Rd SoilR/man/83.Rd SoilR/man/84.Rd SoilR/man/85.Rd SoilR/man/86.Rd SoilR/man/87.Rd SoilR/man/88.Rd SoilR/man/89.Rd SoilR/man/9.Rd SoilR/man/90.Rd SoilR/man/91.Rd SoilR/man/92.Rd SoilR/man/93.Rd SoilR/man/94.Rd SoilR/man/95.Rd SoilR/man/96.Rd SoilR/man/97.Rd SoilR/man/98.Rd SoilR/man/99.Rd
SoilR/man/manMan
SoilR/man/manMan/C14Atm.Rd
SoilR/man/manMan/C14Atm_NH.Rd
SoilR/man/manMan/HarvardForest14CO2.Rd
SoilR/man/manMan/Hua2013.Rd
SoilR/man/manMan/IntCal09.Rd
SoilR/man/manMan/IntCal13.Rd
SoilR/man/manMan/as.character.Rd
SoilR/man/manMan/eCO2.Rd
SoilR/vignettes
SoilR/vignettes/GeneralModel.Rnw
SoilR/vignettes/ParameterEstimation.Rnw

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