1 | Converts from Delta14C to Absolute Fraction Modern |
10 | ~~ Methods for Function 'availableParticleProperties' ~~ |
100 | ~~ Methods for Function 'getAccumulatedRelease' ~~ |
101 | Calculates the accumulated carbon release from the pools as a... |
102 | getC14 method Model 14 |
103 | ~~ Methods for Function 'getC14' ~~ |
104 | Calculates the mass of radiocarbon (14C fraction times C... |
105 | getC method Model |
106 | ~~ Methods for Function 'getC' ~~ |
107 | Calculates the C content of the pools |
108 | ~~ Methods for Function 'getCumulativeC' ~~ |
109 | ~~ Methods for Function 'getDecompOp' ~~ |
11 | ~~ Methods for Function 'availableParticleSets' ~~ |
110 | ~~ Methods for Function 'getDotOut' ~~ |
111 | read access to the models F14C variable |
112 | ~~ Methods for Function 'getF14C' ~~ |
113 | Calculates the average radiocarbon fraction weighted by the... |
114 | radiocarbon |
115 | ~~ Methods for Function 'getF14' ~~ |
116 | Calculates the 14C fraction of all pools |
117 | average radiocarbon fraction weighted by carbonrelease |
118 | ~~ Methods for Function 'getF14R' ~~ |
119 | Calculates the average radiocarbon fraction weighted by the... |
12 | ~~ Methods for Function 'availableResidentSets' ~~ |
120 | extract the format string |
121 | ~~ Methods for Function 'getFormat' ~~ |
122 | creates a constant timedependent function and returns it |
123 | getFunctionDefinition method DecompositionOperator |
124 | ~~ Methods for Function 'getFunctionDefinition' ~~ |
125 | getFunctionDefinition method TimeMap |
126 | getFunctionDefinition |
127 | ~~ Methods for Function 'getInFluxes' ~~ |
128 | ~~ Methods for Function 'getInitialValues' ~~ |
129 | compute the mean transit time |
13 | Implementation of the microbial model AWB (Allison,... |
130 | ~~ Methods for Function 'getMeanTransitTime' ~~ |
131 | Access to the mean transit time |
132 | ~~ Methods for Function 'getNumberOfPools' ~~ |
133 | ~~ Methods for Function 'getOutputFluxes' ~~ |
134 | ~~ Methods for Function 'getOutputReceivers' ~~ |
135 | ~~ Methods for Function 'getParticleMonteCarloSimulator' ~~ |
136 | 14C respiration rate for all pools |
137 | ~~ Methods for Function 'getReleaseFlux14' ~~ |
138 | Calculates the mass of radiocarbon in the release flux (14C... |
139 | get the release rate for all pools |
14 | Implementation of the microbial model Bacwave (bacterial... |
140 | ~~ Methods for Function 'getReleaseFlux' ~~ |
141 | Calculates the release of C from each pool |
142 | return an (infinite) time range since the operator is... |
143 | ask for the boundaries of the underlying time interval |
144 | ~~ Methods for Function 'getTimeRange' ~~ |
145 | ask for the boundaries of the underlying time interval |
146 | getTimeRange |
147 | getTimes method Model |
148 | ~~ Methods for Function 'getTimes' ~~ |
149 | Extracts the times argument |
15 | Binding of pre- and post-bomb Delta14C curves |
150 | ~~ Methods for Function 'getTransferCoefficients' ~~ |
151 | ~~ Methods for Function 'getTransferMatrix' ~~ |
152 | compute the TransitTimeDistributionDensity |
153 | ~~ Methods for Function 'getTransitTimeDistributionDensity'... |
154 | methods for transit time distributions |
155 | ~~ Methods for Function 'getValues' ~~ |
156 | Delta14C in soil CO2 efflux from Harvard Forest |
157 | Atmospheric radiocarbon for the period 1950-2010 from Hua et... |
158 | Implementation of the Introductory Carbon Balance Model... |
159 | Class '"InFlux"' |
16 | Class '"BoundFc"' |
160 | pass through constructor |
161 | ~~ Methods for Function 'InFlux' ~~ |
162 | create a BoundInFlux from a TimeMap object |
163 | internal constructor (new) |
164 | internal constructor |
165 | initialize called by (new) |
166 | An internal constructor for 'Model_14' objects not... |
167 | internal constructor for Model objects |
168 | ~~ Methods for Function 'initialize' ~~ |
169 | initialize called by (new) |
17 | constructor |
170 | Northern Hemisphere atmospheric radiocarbon for the pre-bomb... |
171 | Atmospheric radiocarbon for the 0-50,000 yr BP period |
172 | Add lines with the output of 'getC14', 'getC', or... |
173 | Class '"Model_14"' |
174 | ~~ Methods for Function 'Model_14' ~~ |
175 | A general constructor |
176 | Class '"Model"' |
177 | general constructor for class Model |
178 | ~~ Methods for Function 'Model' ~~ |
179 | A general constructor |
18 | constructor |
180 | Implementation of a one-pool C14 model |
181 | Implementation of a one pool model |
182 | ParallelModel |
183 | Plots the output of 'getF14' for each pool over time |
184 | Plots the output of 'getC' or 'getReleaseFlux' for each pool... |
185 | not yet implemented method to plot an overview of several... |
186 | ~~ Methods for Function 'plot' ~~ |
187 | not yet implemented method to print an overview of several... |
188 | ~~ Methods for Function 'print' ~~ |
189 | helper function to compute respiration coefficients |
19 | constructor |
190 | Implementation of the RothCModel |
191 | General m-pool linear C14 model with series structure |
192 | General m-pool linear model with series structure |
193 | show method Model |
194 | ~~ Methods for Function 'show' ~~ |
195 | Models of Soil Organic Matter Decomposition |
196 | summary method Model |
197 | ~~ Methods for Function 'summary' ~~ |
198 | System and pool age for compartment models |
199 | Implementation of a 6-pool Michaelis-Menten model |
2 | Converts from Delta14C to Absolute Fraction Modern |
20 | constructor |
200 | Implementation of a three-pool C14 model with feedback... |
201 | Implementation of a three pool model with feedback structure |
202 | Implementation of a three-pool C14 model with parallel... |
203 | Implementation of a three pool model with parallel structure |
204 | Implementation of a three-pool C14 model with series... |
205 | Implementation of a three pool model with series structure |
206 | Class '"TimeMap"' |
207 | TimeMap from Dataframe |
208 | constructor |
209 | constructor |
21 | constructor |
210 | ~~ Methods for Function 'TimeMap' ~~ |
211 | deprecated constructor of the class TimeMap. |
212 | generic constructor |
213 | Transit times for compartment models |
214 | Estimation of the turnover time from a soil radiocarbon... |
215 | Implementation of a two-pool C14 model with feedback... |
216 | Implementation of a two pool model with feedback structure |
217 | Implementation of a two-pool Michaelis-Menten model |
218 | Implementation of a two-pool C14 model with parallel... |
219 | Implementation of a linear two pool model with parallel... |
22 | constructor |
220 | Implementation of a two-pool C14 model with series structure |
221 | Implementation of a two pool model with series structure |
222 | Implementation of the Yasso07 model |
223 | Implementation of the Yasso model. |
224 | (experimenta) partially overload [ ] for models |
225 | ~~ Methods for Function '[' ~~ |
226 | ~~ Methods for Function '[[<-' ~~ |
227 | ~~ Methods for Function '[[' ~~ |
228 | ~~ Methods for Function '$' ~~ |
23 | ~~ Methods for Function 'BoundFc' ~~ |
24 | generic constructor |
25 | Class '"BoundInFlux"' |
26 | constructor |
27 | constructor |
28 | constructor |
29 | constructor |
3 | ~~ Methods for Function... |
30 | ~~ Methods for Function 'BoundInFlux' ~~ |
31 | convert to BoundInFlux |
32 | generic constructor |
33 | Class '"BoundLinDecompOp"' |
34 | convert a ConstLinDecompOp to a BoundLinDecompOp |
35 | a constructor |
36 | a constructor |
37 | ~~ Methods for Function 'BoundLinDecompOp' ~~ |
38 | create a BoundLinDecompOp from a TimeMap |
39 | Generic constructor |
4 | Converts its argument to an Absolute Fraction Modern... |
40 | Post-bomb atmospheric 14C fraction |
41 | Atmospheric 14C fraction |
42 | Implementation of the Century model |
43 | ~~ Methods for Function 'computeResults' ~~ |
44 | creates an object containing the initial values for the 14C... |
45 | Class '"ConstLinDecompOp"' |
46 | construct from matric |
47 | ~~ Methods for Function 'ConstLinDecompOp' ~~ |
48 | Generic constructor |
49 | Class '"DecompOp"' |
5 | convert to Absolute Fraction Normal values |
50 | pass through constructor |
51 | creates a ConstanDecompOp from a matrix |
52 | ~~ Methods for Function 'DecompOp' ~~ |
53 | creates a BoundLinDecompOp from a TimeMap object |
54 | Class '"DecompositionOperator"' |
55 | Converts Absolute Fraction Modern values to Delta14C |
56 | Converts to Delta14C format |
57 | ~~ Methods for Function... |
58 | Converts its argument from an Absolute Fraction Modern to a... |
59 | convert to Absolute Fraction Normal values |
6 | ~~ Methods for Function 'AbsoluteFractionModern' ~~ |
60 | ~~ Methods for Function 'Delta14C' ~~ |
61 | deSolve lsoda wrapper |
62 | Soil CO2 efflux from an incubation experiment |
63 | ~~ Methods for Function 'fromDataFrame' ~~ |
64 | assemble the objects components |
65 | Effects of temperature on decomposition rates according the... |
66 | Effects of temperature on decomposition rates according the... |
67 | Effects of temperature on decomposition rates according the... |
68 | Effects of temperature on decomposition rates according to... |
69 | Effects of temperature on decomposition rates according to... |
7 | ~~ Methods for Function 'as.character' ~~ |
70 | Effects of temperature on decomposition rates according to... |
71 | Effects of temperature on decomposition rates according to a... |
72 | Effects of temperature on decomposition rates according to a... |
73 | Effects of temperature on decomposition rates according to a... |
74 | Effects of temperature on decomposition rates according to a... |
75 | Effects of temperature on decomposition rates according to... |
76 | Effects of temperature on decomposition rates according to... |
77 | Effects of moisture on decomposition rates according to the... |
78 | Effects of moisture on decomposition rates according to the... |
79 | Effects of moisture on decomposition rates according to the... |
8 | convert TimeMap Objects to something printable. |
80 | Effects of moisture on decomposition rates according to the... |
81 | Effects of moisture on decomposition rates according to the... |
82 | Effects of moisture on decomposition rates according to the... |
83 | Effects of moisture on decomposition rates according to the... |
84 | Effects of moisture on decomposition rates according to the... |
85 | Effects of moisture on decomposition rates according to the... |
86 | Effects of moisture on decomposition rates according to the... |
87 | Implementation of a the six-pool C14 model proposed by... |
88 | a constructor for class Model |
89 | a constructor for class Model_14 |
9 | creates a character representation of the object in question |
90 | a constructor for class Model <- 14 |
91 | a constructor for class Model_ 14 |
92 | a constructor for class Model |
93 | a constructor for class Model |
94 | ~~ Methods for Function 'GeneralModel_14' ~~ |
95 | A general constructor |
96 | a constructor for class Model |
97 | ~~ Methods for Function 'GeneralModel' ~~ |
98 | A general constructor |
99 | time integrals of release fluxes per pool |
manMan/as.character | creates a character representation of the object in question |
manMan/C14Atm | Atmospheric 14C fraction |
manMan/C14Atm_NH | Post-bomb atmospheric 14C fraction |
manMan/eCO2 | Soil CO2 efflux from an incubation experiment |
manMan/HarvardForest14CO2 | Delta14C in soil CO2 efflux from Harvard Forest |
manMan/Hua2013 | Atmospheric radiocarbon for the period 1950-2010 from Hua et... |
manMan/IntCal09 | Northern Hemisphere atmospheric radiocarbon for the pre-bomb... |
manMan/IntCal13 | Atmospheric radiocarbon for the 0-50,000 yr BP period |
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