API for SoilR
Models of Soil Organic Matter Decomposition

Global functions
$,NlModel-method	Man page
$-methods	Man page
AWBmodel	Man page
AbsoluteFractionModern,BoundFc-method	Man page
AbsoluteFractionModern,ConstFc-method	Man page
AbsoluteFractionModern-methods	Man page
AbsoluteFractionModern_from_Delta14C	Man page
AbsoluteFractionModern_from_Delta14C,matrix-method	Man page
AbsoluteFractionModern_from_Delta14C,numeric-method	Man page
AbsoluteFractionModern_from_Delta14C-methods	Man page
AbsoluteFractionModern_from_Delta14C_method__matrix	Man page
AbsoluteFractionModern_from_Delta14C_method__numeric	Man page
AbsoluteFractionModern_method__BoundFc	Man page
BoundFc	Man page
BoundFc,data.frame,missing,missing,missing,character,function-me	Man page
BoundFc,data.frame,missing,missing,missing,character,missing-met	Man page
BoundFc,data.frame,missing,missing,numeric,character,function-me	Man page
BoundFc,data.frame,missing,missing,numeric,character,missing-met	Man page
BoundFc,function,numeric,numeric,missing,character,missing-metho	Man page
BoundFc,function,numeric,numeric,numeric,character,missing-metho	Man page
BoundFc-class	Man page
BoundFc-methods	Man page
BoundFc_method__data.frame_missing_missing_missing_character_fun	Man page
BoundFc_method__data.frame_missing_missing_missing_character_mis	Man page
BoundFc_method__data.frame_missing_missing_numeric_character_fun	Man page
BoundFc_method__data.frame_missing_missing_numeric_character_mis	Man page
BoundFc_method__function_numeric_numeric_missing_character_missi	Man page
BoundFc_method__function_numeric_numeric_numeric_character_missi	Man page
BoundInFlux	Man page
BoundInFlux,TimeMap,missing,missing,missing,missing-method	Man page
BoundInFlux,data.frame,missing,missing,missing,missing-method	Man page
BoundInFlux,data.frame,missing,missing,numeric,function-method	Man page
BoundInFlux,function,numeric,numeric,missing,missing-method	Man page
BoundInFlux,function,numeric,numeric,numeric,missing-method	Man page
BoundInFlux-class	Man page
BoundInFlux-methods	Man page
BoundInFlux.new	Source code
BoundInFlux_method__TimeMap_missing_missing_missing_missing	Man page
BoundInFlux_method__data.frame_missing_missing_missing_missing	Man page
BoundInFlux_method__data.frame_missing_missing_numeric_function	Man page
BoundInFlux_method__function_numeric_numeric_missing_missing	Man page
BoundInFlux_method__function_numeric_numeric_numeric_missing	Man page
BoundLinDecompOp	Man page
BoundLinDecompOp,ConstLinDecompOp,ANY,ANY-method	Man page
BoundLinDecompOp,TimeMap,missing,missing-method	Man page
BoundLinDecompOp,data.frame,missing,missing-method	Man page
BoundLinDecompOp,function,numeric,numeric-method	Man page
BoundLinDecompOp-class	Man page
BoundLinDecompOp-methods	Man page
BoundLinDecompOp_method__ConstLinDecompOp	Man page
BoundLinDecompOp_method__TimeMap_missing_missing	Man page
BoundLinDecompOp_method__data.frame_missing_missing	Man page
BoundLinDecompOp_method__function_numeric_numeric	Man page
C14Atm	Man page Man page
C14Atm_NH	Man page Man page
CenturyModel	Man page
ConstFc	Man page Source code
ConstLinDecompOp	Man page
ConstLinDecompOp,matrix-method	Man page
ConstLinDecompOp-class	Man page
ConstLinDecompOp-methods	Man page
ConstLinDecompOp_method__matrix	Man page
DecompOp,DecompOp-method	Man page
DecompOp,TimeMap-method	Man page
DecompOp,matrix-method	Man page
DecompOp-class	Man page
DecompOp-methods	Man page
DecompOp_method__DecompOp	Man page
DecompOp_method__TimeMap	Man page
DecompOp_method__matrix	Man page
DecompositionOperator-class	Man page
Delta14C,BoundFc-method	Man page
Delta14C,ConstFc-method	Man page
Delta14C-methods	Man page
Delta14C_from_AbsoluteFractionModern	Man page
Delta14C_from_AbsoluteFractionModern,matrix-method	Man page
Delta14C_from_AbsoluteFractionModern,numeric-method	Man page
Delta14C_from_AbsoluteFractionModern-methods	Man page
Delta14C_from_AbsoluteFractionModern_method__matrix	Man page
Delta14C_from_AbsoluteFractionModern_method__numeric	Man page
Delta14C_method__BoundFc	Man page
FcAtm.from.Dataframe	Source code
GaudinskiModel14	Man page
GeneralModel	Man page
GeneralModel,numeric,ANY,numeric-method	Man page
GeneralModel-methods	Man page
GeneralModel_14	Man page
GeneralModel_14,numeric,ANY,numeric,ANY,ANY,ANY,missing,missing,	Man page
GeneralModel_14,numeric,ANY,numeric,ANY,ANY,ANY,missing,numeric,	Man page Man page Man page Man page
GeneralModel_14,numeric,ANY,numeric,ANY,ANY,missing,ANY,numeric,	Man page
GeneralModel_14-methods	Man page
GeneralModel_14_method__numeric_ANY_numeric_ANY_ANY_ANY_missing_	Man page Man page Man page Man page Man page
GeneralModel_14_method__numeric_ANY_numeric_ANY_ANY_missing_ANY_	Man page
GeneralModel_method__numeric_ANY_numeric	Man page
HarvardForest14CO2	Man page Man page
Hua2013	Man page Man page
ICBMModel	Man page
InFlux,InFlux-method	Man page
InFlux,TimeMap-method	Man page
InFlux-class	Man page
InFlux-methods	Man page
InFlux_method__InFlux	Man page
InFlux_method__TimeMap	Man page
IntCal09	Man page Man page
IntCal13	Man page Man page
MeanAge	Source code
MeanAge2	Source code
MeanAge3	Source code
MeanTT	Source code
Model	Man page
Model,numeric,ANY,numeric-method	Man page
Model-class	Man page
Model-methods	Man page
Model_14	Man page
Model_14,numeric,ANY,numeric,ConstFc,ANY,ANY,numeric,function,lo	Man page
Model_14,numeric,ANY,numeric,ConstFc,ANY,ANY,numeric,missing,log	Man page
Model_14-class	Man page
Model_14-methods	Man page
Model_method__numeric_ANY_numeric	Man page
NpYdot	Source code
OnepModel	Man page
OnepModel14	Man page
ParallelModel	Man page
RespirationCoefficients	Man page Source code
RothCModel	Man page
SeriesLinearModel	Man page
SeriesLinearModel14	Man page
SoilR	Man page
SoilR-package	Man page
SoilR.F0.new	Source code
SoilR.euler	Source code
ThreepFeedbackModel	Man page
ThreepFeedbackModel14	Man page
ThreepParallelModel	Man page
ThreepParallelModel14	Man page
ThreepSeriesModel	Man page
ThreepSeriesModel14	Man page
ThreepairMMmodel	Man page
TimeMap	Man page
TimeMap,data.frame,missing,missing-method	Man page
TimeMap,function,numeric,numeric-method	Man page
TimeMap-class	Man page
TimeMap-methods	Man page
TimeMap.from.Dataframe	Man page Source code
TimeMap.new	Man page Source code
TimeMapWarningBoundFc	Source code
TimeMapWarningInFluxes	Source code
TimeMapWarningOperators	Source code
TimeMap_method__data.frame_missing_missing	Man page
TimeMap_method__function_numeric_numeric	Man page
TwopFeedbackModel	Man page
TwopFeedbackModel14	Man page
TwopMMmodel	Man page
TwopParallelModel	Man page
TwopParallelModel14	Man page
TwopSeriesModel	Man page
TwopSeriesModel14	Man page
WarningConstFc	Source code
Yasso07Model	Man page
YassoModel	Man page
[,Model,character,ANY,ANY-method	Man page
[,NlModel,character,ANY,ANY-method	Man page
[-methods	Man page
[[,MCSim-method	Man page
[[-methods	Man page
[[<-,MCSim-method	Man page
[[<--methods	Man page
[_method__Model_character	Man page
as.character	Man page Man page
as.character,MCSim-method	Man page
as.character,TimeMap-method	Man page
as.character-methods	Man page
as.character_method__TimeMap	Man page
availableParticleProperties,MCSim-method	Man page
availableParticleProperties-methods	Man page
availableParticleSets,MCSim-method	Man page
availableParticleSets-methods	Man page
availableResidentSets,MCSim-method	Man page
availableResidentSets-methods	Man page
bacwaveModel	Man page
bind.C14curves	Man page
computeResults,MCSim-method	Man page
computeResults,NlModel-method	Man page
computeResults-methods	Man page
correctnessOfBoundFc	Source code
correctnessOfConstFc	Source code
correctnessOfDecompOp	Source code
correctnessOfModel	Source code
correctnessOfModel14	Source code
correctnessOfNlModel	Source code
deSolve.lsoda.wrapper	Man page Source code
eCO2	Man page Man page
errorPlotC	Source code
fT.Arrhenius	Man page
fT.Century1	Man page
fT.Century2	Man page
fT.Daycent1	Man page
fT.Daycent2	Man page
fT.Demeter	Man page
fT.KB	Man page
fT.LandT	Man page
fT.Q10	Man page
fT.RothC	Man page
fT.Standcarb	Man page
fT.linear	Man page
fW.Candy	Man page
fW.Century	Man page
fW.Daycent1	Man page
fW.Daycent2	Man page
fW.Demeter	Man page
fW.Gompertz	Man page
fW.Moyano	Man page
fW.RothC	Man page
fW.Skopp	Man page
fW.Standcarb	Man page
fromDataFrame,TimeMap,data.frame-method	Man page
fromDataFrame-methods	Man page
fromDataFrame_method__TimeMap_data.frame	Man page
fromToSplitter	Source code Source code
getAccumulatedRelease	Man page
getAccumulatedRelease,Model-method	Man page
getAccumulatedRelease-methods	Man page
getAccumulatedRelease_method__Model	Man page
getC	Man page
getC,Model-method	Man page
getC,NlModel-method	Man page
getC-methods	Man page
getC14	Man page
getC14,Model_14-method	Man page
getC14-methods	Man page
getC14_method__Model_14	Man page
getC_method__Model	Man page
getCumulativeC,NlModel-method	Man page
getCumulativeC-methods	Man page
getDecompOp,NlModel-method	Man page
getDecompOp-methods	Man page
getDotOut,TransportDecompositionOperator-method	Man page
getDotOut-methods	Man page
getF14	Man page
getF14,Model_14-method	Man page
getF14-methods	Man page
getF14C	Man page
getF14C,Model_14-method	Man page
getF14C-methods	Man page
getF14C_method__Model_14	Man page
getF14R	Man page
getF14R,Model_14-method	Man page
getF14R-methods	Man page
getF14R_method__Model_14	Man page
getF14_method__Model_14	Man page
getFormat,BoundFc-method	Man page
getFormat,ConstFc-method	Man page
getFormat-methods	Man page
getFormat_method__BoundFc	Man page
getFunctionDefinition	Man page
getFunctionDefinition,ConstLinDecompOp-method	Man page
getFunctionDefinition,DecompositionOperator-method	Man page
getFunctionDefinition,TimeMap-method	Man page
getFunctionDefinition,TransportDecompositionOperator-method	Man page
getFunctionDefinition-methods	Man page
getFunctionDefinition_method__ConstLinDecompOp	Man page
getFunctionDefinition_method__DecompositionOperator	Man page
getFunctionDefinition_method__TimeMap	Man page
getInFluxes,NlModel-method	Man page
getInFluxes-methods	Man page
getInitialValues,NlModel-method	Man page
getInitialValues-methods	Man page
getMeanTransitTime	Man page
getMeanTransitTime,ConstLinDecompOp-method	Man page
getMeanTransitTime-methods	Man page
getMeanTransitTime_method__ConstLinDecompOp	Man page
getNumberOfPools,MCSim-method	Man page
getNumberOfPools,NlModel-method	Man page
getNumberOfPools,TransportDecompositionOperator-method	Man page
getNumberOfPools-methods	Man page
getOutputFluxes,NlModel-method	Man page
getOutputFluxes-methods	Man page
getOutputReceivers,TransportDecompositionOperator,numeric-method	Man page
getOutputReceivers-methods	Man page
getParticleMonteCarloSimulator,NlModel-method	Man page
getParticleMonteCarloSimulator-methods	Man page
getRecipient	Source code Source code
getReleaseFlux	Man page
getReleaseFlux,Model-method	Man page
getReleaseFlux,NlModel-method	Man page
getReleaseFlux-methods	Man page
getReleaseFlux14	Man page
getReleaseFlux14,Model_14-method	Man page
getReleaseFlux14-methods	Man page
getReleaseFlux14_method__Model_14	Man page
getReleaseFlux_method__Model	Man page
getSender	Source code Source code
getSingleCol	Source code
getTimeRange	Man page
getTimeRange,ConstLinDecompOp-method	Man page
getTimeRange,DecompositionOperator-method	Man page
getTimeRange,TimeMap-method	Man page
getTimeRange-methods	Man page
getTimeRange_method__ConstLinDecompOp	Man page
getTimeRange_method__DecompositionOperator	Man page
getTimeRange_method__TimeMap	Man page
getTimes	Man page
getTimes,Model-method	Man page
getTimes,NlModel-method	Man page
getTimes-methods	Man page
getTimes_method__Model	Man page
getTransferCoefficients,NlModel-method	Man page
getTransferCoefficients,TransportDecompositionOperator-method	Man page
getTransferCoefficients-methods	Man page
getTransferMatrix,TransportDecompositionOperator-method	Man page
getTransferMatrix-methods	Man page
getTransitTimeDistributionDensity	Man page
getTransitTimeDistributionDensity,ConstLinDecompOp-method	Man page
getTransitTimeDistributionDensity-methods	Man page
getTransitTimeDistributionDensity_method__ConstLinDecompOp	Man page
getValues,ConstFc-method	Man page
getValues-methods	Man page
initialize,BoundFc-method	Man page
initialize,ConstFc-method	Man page
initialize,ConstLinDecompOp-method	Man page
initialize,DecompositionOperator-method	Man page
initialize,MCSim-method	Man page
initialize,Model-method	Man page
initialize,Model_14-method	Man page
initialize,NlModel-method	Man page
initialize,TimeMap-method	Man page
initialize,TransportDecompositionOperator-method	Man page
initialize-methods	Man page
initialize_method__BoundFc	Man page
initialize_method__ConstLinDecompOp	Man page
initialize_method__DecompositionOperator	Man page
initialize_method__Model	Man page
initialize_method__Model_14	Man page
initialize_method__TimeMap	Man page
is.negative	Source code Source code
key	Source code
leaveKey	Source code
linMaker	Source code
linesCPool	Man page
namedPlot	Source code
pe	Source code
plot,ANY-method	Man page
plot,MCSim-method	Man page
plot,Model-method	Man page
plot,NlModel-method	Man page
plot-methods	Man page
plotAndCheck	Source code
plotC14Pool	Man page
plotCPool	Man page
plot_method__Model	Man page
pp	Source code
print,Model-method	Man page
print,NlModel-method	Man page
print-methods	Man page
print_method__Model	Man page
res2fun	Source code
show,Model-method	Man page
show,NlModel-method	Man page
show-methods	Man page
show_method__Model	Man page
solver	Source code
spectralNorm	Source code
stockKey	Source code
summary,Model-method	Man page
summary,NlModel-method	Man page
summary-methods	Man page
summary_method__Model	Man page
supported14CFractionFormats	Source code
systemAge	Man page
transitTime	Man page
turnoverFit	Man page
vecFuncMaker	Source code