WeightedCluster: Clustering of Weighted Data
Version 1.3-1

The WeightedCluster library provides functions to cluster states sequences and weighted data. These functionalities include aggregating replicated cases, an optimized weighted PAM algorithm, function computing cluster quality measures for a range of clustering solutions and miscellaneous functions to plot clustering solutions of state sequences.

AuthorMatthias Studer [aut, cre]
Date of publication2017-05-15 11:40:50
MaintainerMatthias Studer <matthias.studer@unige.ch>
LicenseGPL (>= 2)
Version1.3-1
URL http://mephisto.unige.ch/weightedcluster
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("WeightedCluster", repos="http://R-Forge.R-project.org")

Popular man pages

as.clustrange: Build a clustrange object to compare different clustering...
as.seqtree: Convert a hierarchical clustering object to a seqtree object.
clusterquality: Cluster quality statistics
kmedoids: K-Medoids or PAM clustering of weighted data.
wcAggregateCases: Aggregate identical cases.
wcCmpCluster: Automatic comparison of clustering methods.
wcSilhouetteObs: Compute the silhouette of each object using weighted data.
See all...

All man pages Function index File listing

Man pages

as.clustrange: Build a clustrange object to compare different clustering...
as.seqtree: Convert a hierarchical clustering object to a seqtree object.
clusterquality: Cluster quality statistics
kmedoids: K-Medoids or PAM clustering of weighted data.
kmedrange: Compute 'wcKMedoids' clustering for different number of...
seqclustname: Automatic labeling of cluster using sequence medoids
wcAggregateCases: Aggregate identical cases.
wcCmpCluster: Automatic comparison of clustering methods.
wcSilhouetteObs: Compute the silhouette of each object using weighted data.

Functions

as.clustrange Man page Source code
as.clustrange.default Source code
as.clustrange.hclust Man page Source code
as.clustrange.twins Man page Source code
as.seqtree Man page Source code
as.seqtree.default Source code
as.seqtree.hclust Man page Source code
as.seqtree.twins Man page Source code
clustrangeboot Source code
crflegend Source code
normalize.values Source code
normalize.values.all Source code
normalize.values.matrix Source code
onAttach Source code
plot.clustrange Man page Source code
plot.clustrangefamily Man page Source code
print.clustrange Source code
print.clustrangefamily Man page Source code
print.kmedoids Source code
print.wcAggregateCases Man page Source code
seqclustname Man page Source code
summary.clustrange Source code
summary.clustrangefamily Man page Source code
wcAggregateCases Man page Source code
wcAggregateCases.data.frame Man page Source code
wcAggregateCases.default Source code
wcAggregateCases.matrix Man page Source code
wcAggregateCases.stslist Source code
wcAggregateCasesInternal Source code
wcClusterQuality Man page Source code
wcClusterQualityInternal Source code
wcCmpCluster Man page Source code
wcKMedRange Man page Source code
wcKMedoids Man page Source code
wcSilhouetteObs Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/aggregatecases.R
R/as.seqtree.R
R/clusterquality.R
R/clustrangefamily.R
R/kmedoids.R
R/kmedrange.R
R/seqclustname.R
R/zzz.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/WeightedCluster.Rnw
inst/doc/WeightedCluster.pdf
inst/doc/WeightedClusterFR.Rnw
inst/doc/WeightedClusterFR.pdf
inst/doc/WeightedClusterPreview.Rnw
inst/doc/WeightedClusterPreview.pdf
man
man/as.clustrange.Rd
man/as.seqtree.Rd
man/clusterquality.Rd
man/kmedoids.Rd
man/kmedrange.Rd
man/seqclustname.Rd
man/wcAggregateCases.Rd
man/wcCmpCluster.Rd
man/wcSilhouetteObs.Rd
src
src/PAM.cpp
src/PAM.h
src/PAMonce.cpp
src/PAMonce.h
src/PAMoncebody.cpp
src/cluster.cpp
src/cluster.h
src/clusterquality.cpp
src/clusterqualitybody.cpp
src/init.c
src/kmedoid.cpp
src/kmedoid.h
src/kmedoidbase.cpp
src/kmedoidbase.h
src/kmedoidbasebody.cpp
src/kmedoidbody.cpp
tests
tests/onecluster.R
tests/typic_analysis.R
vignettes
vignettes/WeightedCluster.Rnw
vignettes/WeightedClusterFR.Rnw
vignettes/WeightedClusterPreview.Rnw
vignettes/manual.bib
vignettes/previewhctree.png
vignettes/randB.RData
vignettes/seqtree.png
vignettes/wardtree.png
WeightedCluster documentation built on May 21, 2017, 2:50 a.m.

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